Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNY1P11-201ENST00000363759 113 ntBASIC1.09□□□□□ -2.23
USP28Q96RU2 Y_RNA.242-201ENST00000364473 110 ntBASIC1.09□□□□□ -2.23
USP28Q96RU2 SNORA79-201ENST00000408376 140 ntBASIC1.09□□□□□ -2.23
USP28Q96RU2 RNU2-64P-201ENST00000411315 191 ntBASIC1.09□□□□□ -2.23
USP28Q96RU2 SNORA18.4-201ENST00000516440 124 ntBASIC1.09□□□□□ -2.23
USP28Q96RU2 RNA5SP404-201ENST00000517118 132 ntBASIC1.09□□□□□ -2.23
USP28Q96RU2 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.09□□□□□ -2.23
USP28Q96RU2 MIR3658-201ENST00000636291 56 ntBASIC1.09□□□□□ -2.23
USP28Q96RU2 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
USP28Q96RU2 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.08□□□□□ -2.24
USP28Q96RU2 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.08□□□□□ -2.24
USP28Q96RU2 Y_RNA.241-201ENST00000364470 117 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 RNU6-818P-201ENST00000364837 108 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 Y_RNA.363-201ENST00000365529 113 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 Y_RNA.370-201ENST00000365589 108 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 RNU6-768P-201ENST00000384683 107 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 SNORA26-201ENST00000391286 122 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 RPS26P48-201ENST00000491713 339 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 AP003484.1-201ENST00000530974 250 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 AC008133.2-201ENST00000624540 351 ntBASIC1.08□□□□□ -2.24
USP28Q96RU2 RNU6-312P-201ENST00000364629 107 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 MT-TR-201ENST00000387439 65 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 RNU6-1135P-201ENST00000411083 103 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.07□□□□□ -2.24
USP28Q96RU2 RNU2-13P-201ENST00000515909 113 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 SNORA31.2-201ENST00000516019 134 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 Y_RNA.662-201ENST00000516028 97 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 RNU7-43P-201ENST00000516554 64 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 RNU6-126P-201ENST00000516685 103 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 RNU6-182P-201ENST00000516970 105 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 AL357312.1-201ENST00000603879 298 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 MIR4791-201ENST00000607666 84 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 AC104465.1-201ENST00000611365 139 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 FTX_2.1-201ENST00000618816 94 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 AC012676.2-201ENST00000619258 186 ntBASIC1.07□□□□□ -2.24
USP28Q96RU2 RNU4-84P-201ENST00000364200 139 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 RNU6-1082P-201ENST00000364574 107 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 Y_RNA.327-201ENST00000365201 102 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
USP28Q96RU2 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
USP28Q96RU2 MIR1302-7-201ENST00000408841 72 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 SNORD116-25-201ENST00000516517 92 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 AL365205.2-201ENST00000594586 68 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 HSPE1P19-201ENST00000603327 295 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 AC134878.1-201ENST00000619901 243 ntBASIC1.06□□□□□ -2.24
USP28Q96RU2 Y_RNA.338-201ENST00000365320 114 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 RNU6-1130P-201ENST00000365434 107 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 Y_RNA.440-201ENST00000384120 114 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 SNORA25-201ENST00000384384 134 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 AC245047.7-201ENST00000440265 293 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 AC108729.3-201ENST00000513484 108 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 SNORA31.4-201ENST00000516049 129 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 MIR548AO-201ENST00000579992 96 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 MIR3668-201ENST00000582138 75 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 MTND1P7-201ENST00000632801 297 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 MIR4251-201ENST00000635819 61 ntBASIC1.05□□□□□ -2.24
USP28Q96RU2 RNU6-804P-201ENST00000384286 107 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 RNU6-886P-201ENST00000384319 105 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 SNORA27-201ENST00000384323 126 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 Y_RNA.521-201ENST00000384560 114 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 MIR222-201ENST00000384992 110 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 MIR1185-1-201ENST00000408598 86 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 AC087499.4-201ENST00000448505 178 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 RPL39P39-201ENST00000455840 151 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 AC107027.2-201ENST00000512197 115 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 AP003716.2-201ENST00000528260 108 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 AL022345.2-201ENST00000606307 135 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
USP28Q96RU2 AC243994.1-201ENST00000618627 109 ntBASIC1.04□□□□□ -2.24
USP28Q96RU2 MTND5P32-201ENST00000560711 1802 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-34-201ENST00000362441 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-12-201ENST00000362583 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-29-201ENST00000362834 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-9-201ENST00000362912 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-21-201ENST00000362963 81 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-14-201ENST00000363090 81 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-13-201ENST00000363358 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-41-201ENST00000363608 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-11-201ENST00000363616 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-5-201ENST00000363633 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-39-201ENST00000363694 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-4-201ENST00000363810 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 RNU1-124P-201ENST00000363861 145 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-16-201ENST00000363887 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-6-201ENST00000363942 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-42-201ENST00000364273 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 Y_RNA.272-201ENST00000364696 102 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-15-201ENST00000364809 81 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-1-201ENST00000364961 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-26-201ENST00000365067 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-10-201ENST00000365073 81 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-43-201ENST00000365503 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORD115-36-201ENST00000365629 82 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 Y_RNA.393-201ENST00000383936 102 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 RNU6-1189P-201ENST00000383958 107 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 Y_RNA.441-201ENST00000384123 112 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 SNORA51.10-201ENST00000384418 136 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 RNU6-913P-201ENST00000390913 95 ntBASIC1.03□□□□□ -2.24
USP28Q96RU2 RNU6-239P-201ENST00000390990 99 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms