Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 AP003327.1-201ENST00000529684 127 ntBASIC0.08□□□□□ -2.4
RPRD1AQ96P16 AC133485.4-201ENST00000561835 220 ntBASIC0.08□□□□□ -2.4
RPRD1AQ96P16 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.08□□□□□ -2.4
RPRD1AQ96P16 C8orf59P2-201ENST00000603441 271 ntBASIC0.08□□□□□ -2.4
RPRD1AQ96P16 AC013791.1-201ENST00000616619 62 ntBASIC0.08□□□□□ -2.4
RPRD1AQ96P16 MIR30D-201ENST00000362283 70 ntBASIC0.07□□□□□ -2.4
RPRD1AQ96P16 SNORD113-8-201ENST00000363497 74 ntBASIC0.07□□□□□ -2.4
RPRD1AQ96P16 RNA5SP117-201ENST00000365294 118 ntBASIC0.07□□□□□ -2.4
RPRD1AQ96P16 SNORD12C-201ENST00000386307 89 ntBASIC0.07□□□□□ -2.4
RPRD1AQ96P16 RNA5SP63-201ENST00000391225 112 ntBASIC0.07□□□□□ -2.4
RPRD1AQ96P16 RNU6-448P-201ENST00000517052 107 ntBASIC0.07□□□□□ -2.4
RPRD1AQ96P16 AC069113.3-201ENST00000521019 150 ntBASIC0.07□□□□□ -2.4
RPRD1AQ96P16 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.07□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.14-201ENST00000362415 103 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 SNORA36.1-201ENST00000363424 132 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 RNA5SP457-201ENST00000363657 124 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 RBMX2P4-201ENST00000441256 376 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 HSPE1P25-201ENST00000455484 251 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 RNU6-976P-201ENST00000516086 111 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 RNU6-693P-201ENST00000516134 107 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 UBE2V2P2-201ENST00000587677 504 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 AL109933.3-201ENST00000619095 188 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 MIR4315-1-201ENST00000636800 73 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 MIR4315-2-201ENST00000640925 73 ntBASIC0.06□□□□□ -2.4
RPRD1AQ96P16 MIR367-201ENST00000362299 68 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.70-201ENST00000362886 110 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 MT-TF-201ENST00000387314 71 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.602-201ENST00000410535 92 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.05□□□□□ -2.4
RPRD1AQ96P16 RNU2-31P-201ENST00000516954 155 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.715-201ENST00000517082 110 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 MIR4662B-201ENST00000579498 81 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 RAC1P9-201ENST00000604990 392 ntBASIC0.05□□□□□ -2.4
RPRD1AQ96P16 SNORD61-201ENST00000384252 73 ntBASIC0.04□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.505-201ENST00000384489 102 ntBASIC0.04□□□□□ -2.4
RPRD1AQ96P16 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
RPRD1AQ96P16 MIR548I3-201ENST00000408378 149 ntBASIC0.04□□□□□ -2.4
RPRD1AQ96P16 AL138752.1-201ENST00000452964 351 ntBASIC0.04□□□□□ -2.4
RPRD1AQ96P16 MIR4724-201ENST00000579485 89 ntBASIC0.04□□□□□ -2.4
RPRD1AQ96P16 AC006157.1-201ENST00000611750 366 ntBASIC0.04□□□□□ -2.4
RPRD1AQ96P16 MIR376A1-201ENST00000616574 68 ntBASIC0.04□□□□□ -2.4
RPRD1AQ96P16 RNU6-1272P-201ENST00000362776 107 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.85-201ENST00000363014 111 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 SNORD24-201ENST00000383884 75 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.424-201ENST00000384063 103 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.569-201ENST00000384749 103 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 RNA5SP127-201ENST00000411051 133 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 FGF7P4-201ENST00000509595 295 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 MTCO2P24-201ENST00000515611 426 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 RNU6-1270P-201ENST00000517128 108 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 AC112693.2-201ENST00000556538 232 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 MIR5692C2-201ENST00000577959 77 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 MIR2909-201ENST00000617113 69 ntBASIC0.03□□□□□ -2.4
RPRD1AQ96P16 Y_RNA.315-201ENST00000365117 102 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.02□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.639-201ENST00000458981 102 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 RNU2-11P-201ENST00000459191 187 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 RNU6-475P-201ENST00000516073 104 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 AC131281.1-201ENST00000522984 164 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 AC124312.5-201ENST00000604451 268 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 AC007485.1-201ENST00000616755 206 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 MIR8066-201ENST00000617280 78 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.02□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.42-201ENST00000362660 108 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 RNU6-888P-201ENST00000363010 101 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 RNU6-740P-201ENST00000364734 105 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 SNORD77.3-201ENST00000391113 65 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 MIR1302-11-201ENST00000408051 138 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 MIR1302-9-201ENST00000408365 138 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 MIR1302-10-201ENST00000408734 138 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.617-201ENST00000410920 90 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 RNU7-96P-201ENST00000459535 64 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 RNU6-998P-201ENST00000515894 101 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 RNU6-397P-201ENST00000516226 104 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 MIR1302-2-201ENST00000607096 138 ntBASIC0.01□□□□□ -2.41
RPRD1AQ96P16 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.01□□□□□ -2.41
RPRD1AQ96P16 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.01□□□□□ -2.41
RPRD1AQ96P16 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.01□□□□□ -2.41
RPRD1AQ96P16 RNU4-90P-201ENST00000362773 141 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 SNORA42.1-201ENST00000363515 137 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.293-201ENST00000364908 93 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.445-201ENST00000384168 102 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 MIR644A-201ENST00000385262 94 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 SNORD115-46-201ENST00000390982 71 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 RNU2-59P-201ENST00000410482 191 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0□□□□□ -2.41
RPRD1AQ96P16 AC100767.1-201ENST00000528178 123 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 MIR5190-201ENST00000581537 80 ntBASIC0□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 SNORA72.1-201ENST00000363485 129 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 SNORD93-201ENST00000408813 74 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 RNU4-83P-201ENST00000410863 133 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 PMCHL1-202ENST00000423102 261 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 AF228730.3-201ENST00000436691 102 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 RNU6-365P-201ENST00000517113 106 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 AP001282.2-201ENST00000616149 309 ntBASIC-0.01□□□□□ -2.41
RPRD1AQ96P16 Y_RNA.154-201ENST00000363624 102 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 459.8 ms