Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 RNU6-913P-201ENST00000390913 95 ntBASIC0.39□□□□□ -2.35
ZNF560Q96MR9 MIR938-201ENST00000401216 83 ntBASIC0.39□□□□□ -2.35
ZNF560Q96MR9 BTF3P11-201ENST00000426582 477 ntBASIC0.39□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.641-201ENST00000459414 105 ntBASIC0.39□□□□□ -2.35
ZNF560Q96MR9 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.39□□□□□ -2.35
ZNF560Q96MR9 uc_338.6-201ENST00000613544 171 ntBASIC0.39□□□□□ -2.35
ZNF560Q96MR9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.39□□□□□ -2.35
ZNF560Q96MR9 snoU2_19.2-201ENST00000363024 80 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 RNU6-770P-201ENST00000363929 105 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.276-201ENST00000364732 109 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.393-201ENST00000383936 102 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.540-201ENST00000384638 111 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.541-201ENST00000384640 113 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.38□□□□□ -2.35
ZNF560Q96MR9 RPS29P24-201ENST00000486345 171 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 RNU6-365P-201ENST00000517113 106 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 RNU6-988P-201ENST00000519081 107 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 AC100767.1-201ENST00000528178 123 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 AL162730.1-201ENST00000605734 292 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.802-201ENST00000614892 130 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 MIR6740-201ENST00000618268 113 ntBASIC0.38□□□□□ -2.35
ZNF560Q96MR9 RNU6-806P-201ENST00000365147 105 ntBASIC0.37□□□□□ -2.35
ZNF560Q96MR9 SNORD61-201ENST00000384252 73 ntBASIC0.37□□□□□ -2.35
ZNF560Q96MR9 RNU6-662P-201ENST00000384253 104 ntBASIC0.37□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.509-201ENST00000384506 99 ntBASIC0.37□□□□□ -2.35
ZNF560Q96MR9 MIR548A2-201ENST00000384956 97 ntBASIC0.37□□□□□ -2.35
ZNF560Q96MR9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.37□□□□□ -2.35
ZNF560Q96MR9 SNORA68.3-201ENST00000515906 83 ntBASIC0.37□□□□□ -2.35
ZNF560Q96MR9 snoU18.1-201ENST00000629629 71 ntBASIC0.37□□□□□ -2.35
ZNF560Q96MR9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.36□□□□□ -2.35
ZNF560Q96MR9 AC090625.1-201ENST00000357130 210 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 RNU6-888P-201ENST00000363010 101 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.214-201ENST00000364201 112 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 RNU6-474P-201ENST00000384243 107 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 ELOCP20-201ENST00000422460 345 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 AL731563.1-201ENST00000442202 214 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.631-201ENST00000459607 101 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 RNU6-1143P-201ENST00000516125 104 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 RNU6-504P-201ENST00000516568 104 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 AP003733.2-201ENST00000529409 171 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 AL008718.3-201ENST00000610217 321 ntBASIC0.36□□□□□ -2.35
ZNF560Q96MR9 AC010332.2-201ENST00000613083 1904 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 UBE2WP1-201ENST00000362030 340 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 MIRLET7D-201ENST00000362263 87 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.216-201ENST00000364205 93 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 SNORA1.1-201ENST00000364671 133 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 MIR215-201ENST00000384858 110 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 MIR588-201ENST00000384900 83 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 SNORD100-201ENST00000408573 76 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 RPL21P38-201ENST00000418090 167 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 snoU13.2-201ENST00000459201 104 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 AC090897.1-201ENST00000580909 226 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 AC006006.1-201ENST00000603082 144 ntBASIC0.35□□□□□ -2.35
ZNF560Q96MR9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
ZNF560Q96MR9 Y_RNA.19-201ENST00000362462 99 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 Y_RNA.138-201ENST00000363462 102 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU4-10P-201ENST00000364383 140 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.36
ZNF560Q96MR9 MIR125B2-201ENST00000385128 89 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-1319P-201ENST00000390855 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-747P-201ENST00000390928 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-241P-201ENST00000391148 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 SNORA26-201ENST00000391286 122 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-1165P-201ENST00000410119 107 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-447P-201ENST00000410293 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-1118P-201ENST00000410382 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-1076P-201ENST00000410397 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-355P-201ENST00000410427 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-791P-201ENST00000410467 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-705P-201ENST00000410601 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-1100P-201ENST00000410691 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-860P-201ENST00000410860 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU2-55P-201ENST00000411146 174 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-602P-201ENST00000411155 105 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-1217P-201ENST00000411276 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU6-785P-201ENST00000411324 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 MTATP6P23-201ENST00000440153 476 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 MTND5P22-201ENST00000458380 195 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 RNU7-96P-201ENST00000459535 64 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 SNORD36C-201ENST00000516733 66 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 U6.90-201ENST00000614007 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 U6.70-201ENST00000620287 104 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 AC092634.7-201ENST00000621022 103 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 AC010487.4-201ENST00000637027 61 ntBASIC0.34□□□□□ -2.36
ZNF560Q96MR9 Y_RNA.16-201ENST00000362421 102 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 Y_RNA.128-201ENST00000363391 112 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 Y_RNA.410-201ENST00000383992 113 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 RNY1P4-201ENST00000384595 115 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 SNORA8.3-201ENST00000384679 139 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 Y_RNA.572-201ENST00000384757 98 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 SNORD77.3-201ENST00000391113 65 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 RNU7-185P-201ENST00000459215 60 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.33□□□□□ -2.36
ZNF560Q96MR9 RNY3P15-201ENST00000516297 97 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 AL160413.1-201ENST00000622780 310 ntBASIC0.33□□□□□ -2.36
ZNF560Q96MR9 RNU6-364P-201ENST00000384387 107 ntBASIC0.32□□□□□ -2.36
ZNF560Q96MR9 MIR563-201ENST00000385080 79 ntBASIC0.32□□□□□ -2.36
ZNF560Q96MR9 HMGN1P33-201ENST00000432945 451 ntBASIC0.32□□□□□ -2.36
ZNF560Q96MR9 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.32□□□□□ -2.36
ZNF560Q96MR9 RNU6-998P-201ENST00000515894 101 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms