Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SNORD115-29-201ENST00000362834 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-9-201ENST00000362912 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-21-201ENST00000362963 81 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-14-201ENST00000363090 81 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 Y_RNA.122-201ENST00000363331 96 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-13-201ENST00000363358 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-41-201ENST00000363608 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-11-201ENST00000363616 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-5-201ENST00000363633 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-39-201ENST00000363694 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-4-201ENST00000363810 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-16-201ENST00000363887 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-6-201ENST00000363942 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-42-201ENST00000364273 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-15-201ENST00000364809 81 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-1-201ENST00000364961 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-26-201ENST00000365067 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-10-201ENST00000365073 81 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-43-201ENST00000365503 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-36-201ENST00000365629 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 RNU6-42P-201ENST00000384165 107 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.57□□□□□ -2.32
VPS39Q96JC1 snoU13.16-201ENST00000459350 104 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 AC107297.1-201ENST00000459991 176 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 RNU6-365P-201ENST00000517113 106 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 MIR4714-201ENST00000580728 77 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORA4-201ENST00000584302 138 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 AP000942.4-201ENST00000604811 241 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 AC020891.4-201ENST00000605745 93 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 SNORD115-40-201ENST00000606510 82 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 MIR8055-201ENST00000610739 97 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 MIR376A2-201ENST00000636782 80 ntBASIC0.57□□□□□ -2.32
VPS39Q96JC1 Y_RNA.242-201ENST00000364473 110 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 Y_RNA.634-201ENST00000364811 113 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 RNU6-934P-201ENST00000365154 107 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 Y_RNA.326-201ENST00000365176 113 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 Y_RNA.416-201ENST00000384014 113 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 RNU6-484P-201ENST00000384016 107 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 SNORA1-201ENST00000384107 130 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 RNU6-472P-201ENST00000384299 107 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 SNORA27-201ENST00000384323 126 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 SNORD105-201ENST00000386910 85 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
VPS39Q96JC1 MIR4771-2-201ENST00000577758 74 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 MIR4771-1-201ENST00000582617 74 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 MIR6740-201ENST00000618268 113 ntBASIC0.56□□□□□ -2.32
VPS39Q96JC1 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.56□□□□□ -2.32
VPS39Q96JC1 RNU6-888P-201ENST00000363010 101 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 RNU6-1309P-201ENST00000363305 108 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 Y_RNA.269-201ENST00000364685 89 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 Y_RNA.304-201ENST00000365011 112 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 Y_RNA.396-201ENST00000383949 103 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 SNORA40.5-201ENST00000391061 128 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 RNU1-119P-201ENST00000391122 165 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 AL606845.1-201ENST00000404881 255 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 RNA5SP222-201ENST00000411039 105 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 SNORD2.1-201ENST00000458762 69 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 RNU7-45P-201ENST00000459460 63 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 Y_RNA.720-201ENST00000517166 92 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 MIR4662B-201ENST00000579498 81 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 Z83818.1-201ENST00000603584 150 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 AP000753.3-201ENST00000604083 169 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 U2.14-201ENST00000615943 113 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 RMST_2.1-201ENST00000617263 136 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 AL365265.1-201ENST00000621045 234 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 MIR8062-201ENST00000621515 85 ntBASIC0.55□□□□□ -2.32
VPS39Q96JC1 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.54□□□□□ -2.32
VPS39Q96JC1 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.54□□□□□ -2.32
VPS39Q96JC1 MIR342-201ENST00000362212 99 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 Y_RNA.23-201ENST00000362496 106 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
VPS39Q96JC1 SNORD24-201ENST00000383884 75 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 Y_RNA.461-201ENST00000384263 103 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 RNU6-713P-201ENST00000384761 107 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 RNU2-70P-201ENST00000410718 179 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 AC087499.4-201ENST00000448505 178 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 Y_RNA.673-201ENST00000516306 88 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 RNU6-1299P-201ENST00000516316 100 ntBASIC0.54□□□□□ -2.32
VPS39Q96JC1 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
VPS39Q96JC1 Y_RNA.7-201ENST00000362352 102 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 SNORA63C-201ENST00000364578 129 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 RNU6-945P-201ENST00000383947 107 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 MIR520F-201ENST00000384824 87 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 MT-TN-201ENST00000387400 73 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 Y_RNA.590-201ENST00000410140 107 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 RNU7-62P-201ENST00000458856 62 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 snoU13.18-201ENST00000459483 104 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 RPS29P24-201ENST00000486345 171 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 RNY3P16-201ENST00000516338 101 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 RNU6-504P-201ENST00000516568 104 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.53□□□□□ -2.32
VPS39Q96JC1 AC010332.2-201ENST00000613083 1904 ntBASIC0.53□□□□□ -2.32
VPS39Q96JC1 MIR377-201ENST00000362145 69 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.11-201ENST00000362375 109 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.76-201ENST00000362931 109 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 236 ms