Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PART1_1.1-201ENST00000611761 217 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 MIR376A1-201ENST00000616574 68 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 Z97988.1-201ENST00000637697 135 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.5-201ENST00000362334 102 ntBASIC0.17□□□□□ -2.38
HDDC3Q8N4P3 SNORA27-201ENST00000384323 126 ntBASIC0.17□□□□□ -2.38
HDDC3Q8N4P3 RNU6-130P-201ENST00000411112 103 ntBASIC0.17□□□□□ -2.38
HDDC3Q8N4P3 RPS29P24-201ENST00000486345 171 ntBASIC0.17□□□□□ -2.38
HDDC3Q8N4P3 MIR5190-201ENST00000581537 80 ntBASIC0.17□□□□□ -2.38
HDDC3Q8N4P3 AC008608.1-201ENST00000603910 127 ntBASIC0.17□□□□□ -2.38
HDDC3Q8N4P3 AC122108.2-201ENST00000611946 526 ntBASIC0.17□□□□□ -2.38
HDDC3Q8N4P3 RNU6-1309P-201ENST00000363305 108 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.136-201ENST00000363444 102 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.222-201ENST00000364264 102 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.424-201ENST00000384063 103 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 MRPS35P2-201ENST00000508242 191 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 RNU6-693P-201ENST00000516134 107 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 RNU6-1046P-201ENST00000516538 107 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 MIR4724-201ENST00000579485 89 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 C8orf59P2-201ENST00000603441 271 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 AL021707.8-201ENST00000609428 183 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 AC013791.1-201ENST00000616619 62 ntBASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.16□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.37-201ENST00000362606 108 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 RNU4-90P-201ENST00000362773 141 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.569-201ENST00000384749 103 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 AC073261.1-201ENST00000429409 121 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 snoU13.2-201ENST00000459201 104 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 RNU6-475P-201ENST00000516073 104 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 AC007751.1-201ENST00000529260 376 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 MIR8055-201ENST00000610739 97 ntBASIC0.15□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.293-201ENST00000364908 93 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.390-201ENST00000383932 102 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 MIR1265-201ENST00000408444 86 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 SNORD92-201ENST00000585078 85 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 MIR4768-201ENST00000585270 74 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 AC112487.2-201ENST00000637950 304 ntBASIC0.14□□□□□ -2.39
HDDC3Q8N4P3 SNORA72.1-201ENST00000363485 129 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.445-201ENST00000384168 102 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.486-201ENST00000384398 107 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 RNU6-602P-201ENST00000411155 105 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 RBMX2P4-201ENST00000441256 376 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 FGF7P4-201ENST00000509595 295 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 SNORD77.4-201ENST00000516158 81 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 RNU6-126P-201ENST00000516685 103 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 RNU6-448P-201ENST00000517052 107 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 MIR3678-201ENST00000578455 94 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 MIR4636-201ENST00000582271 80 ntBASIC0.13□□□□□ -2.39
HDDC3Q8N4P3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.170-201ENST00000363746 110 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.356-201ENST00000365475 113 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 SNORA8.2-201ENST00000384372 139 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 RNU6-102P-201ENST00000384485 104 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 MT-TF-201ENST00000387314 71 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 MIR1302-11-201ENST00000408051 138 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 MIR1302-9-201ENST00000408365 138 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 MIR1302-10-201ENST00000408734 138 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 RNU6-397P-201ENST00000516226 104 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 MIR5692C2-201ENST00000577959 77 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 MIR1302-2-201ENST00000607096 138 ntBASIC0.12□□□□□ -2.39
HDDC3Q8N4P3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 SNORD118-201ENST00000363593 134 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 RNU6-514P-201ENST00000384208 107 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 RNU6-938P-201ENST00000411285 103 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 RPL39P25-201ENST00000449384 154 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 HSPE1P25-201ENST00000455484 251 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 RNU6-469P-201ENST00000516253 101 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 RNU6-365P-201ENST00000517113 106 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 RNU6-1270P-201ENST00000517128 108 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 AC100767.1-201ENST00000528178 123 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 MIR4431-201ENST00000579990 94 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 AC037487.3-201ENST00000606668 112 ntBASIC0.11□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.7-201ENST00000362352 102 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 SNORA63.7-201ENST00000365579 123 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 SNORD24-201ENST00000383884 75 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.587-201ENST00000391210 103 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 MIR548I3-201ENST00000408378 149 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 AL138752.1-201ENST00000452964 351 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 MTND4LP30-201ENST00000454092 297 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 Y_RNA.637-201ENST00000459424 114 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 RNU7-96P-201ENST00000459535 64 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 RNU6-863P-201ENST00000515989 104 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 SNORD36C-201ENST00000516733 66 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 MIR5589-201ENST00000579442 60 ntBASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.1□□□□□ -2.39
HDDC3Q8N4P3 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.09□□□□□ -2.39
HDDC3Q8N4P3 RNU6-1272P-201ENST00000362776 107 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 RNU6-1099P-201ENST00000363533 107 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 Y_RNA.529-201ENST00000384586 119 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 RNU6-1009P-201ENST00000390996 107 ntBASIC0.09□□□□□ -2.4
HDDC3Q8N4P3 SNORD77.3-201ENST00000391113 65 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms