Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNORD115-34-201ENST00000362441 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-12-201ENST00000362583 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-29-201ENST00000362834 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-9-201ENST00000362912 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-21-201ENST00000362963 81 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-14-201ENST00000363090 81 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.115-201ENST00000363272 98 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-13-201ENST00000363358 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-41-201ENST00000363608 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-11-201ENST00000363616 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-5-201ENST00000363633 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-39-201ENST00000363694 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-4-201ENST00000363810 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-16-201ENST00000363887 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-6-201ENST00000363942 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-42-201ENST00000364273 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-15-201ENST00000364809 81 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-1-201ENST00000364961 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-26-201ENST00000365067 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-10-201ENST00000365073 81 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-43-201ENST00000365503 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-36-201ENST00000365629 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 MIR758-201ENST00000390227 88 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 RNU6-578P-201ENST00000390980 103 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.622-201ENST00000411091 108 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 RNU6-847P-201ENST00000411115 108 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD79.1-201ENST00000516069 84 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 RN7SKP179-201ENST00000516126 217 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 RNU6-693P-201ENST00000516134 107 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 RNY3P16-201ENST00000516338 101 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORA70.22-201ENST00000517160 124 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 AC109810.1-201ENST00000534066 224 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 MIR4308-201ENST00000580634 81 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 Z83818.1-201ENST00000603584 150 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 SNORD115-40-201ENST00000606510 82 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 AC141273.2-201ENST00000618989 130 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 AC134878.1-201ENST00000619901 243 ntBASIC1.2□□□□□ -2.22
COL28A1Q2UY09 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.19□□□□□ -2.22
COL28A1Q2UY09 MIR411-201ENST00000362239 96 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.91-201ENST00000363042 107 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 RNA5SP264-201ENST00000363115 107 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 RNU1-133P-201ENST00000364867 167 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.363-201ENST00000365529 113 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 SNORA24-201ENST00000384096 131 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 SNORA80D-201ENST00000384488 135 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.571-201ENST00000384753 98 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 RNU6-910P-201ENST00000390844 107 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 RNU6-493P-201ENST00000391321 108 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 SNORA79-201ENST00000408376 140 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.19□□□□□ -2.22
COL28A1Q2UY09 RNU11-2P-201ENST00000516898 142 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 RNU6-1271P-201ENST00000517049 105 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 AC108706.1-201ENST00000611053 297 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 MIR4251-201ENST00000635819 61 ntBASIC1.19□□□□□ -2.22
COL28A1Q2UY09 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
COL28A1Q2UY09 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
COL28A1Q2UY09 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.37-201ENST00000362606 108 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.83-201ENST00000363005 113 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 MIR618-201ENST00000385287 98 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 AC107297.1-201ENST00000459991 176 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 RPS23P4-201ENST00000487908 423 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 RNA5SP476-201ENST00000516613 103 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 AL020996.3-201ENST00000606617 222 ntBASIC1.18□□□□□ -2.22
COL28A1Q2UY09 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
COL28A1Q2UY09 RNU6-379P-201ENST00000363813 104 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.410-201ENST00000383992 113 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 SNORA51.10-201ENST00000384418 136 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 MIR19B1-201ENST00000384829 87 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 SNORA40.5-201ENST00000391061 128 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 RNU6-938P-201ENST00000411285 103 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 AC087343.1-201ENST00000477341 475 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.17□□□□□ -2.22
COL28A1Q2UY09 RNU6-561P-201ENST00000516222 102 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.17□□□□□ -2.22
COL28A1Q2UY09 MIR4295-201ENST00000585286 85 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 RNU2-4P-201ENST00000606190 192 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 MIR4791-201ENST00000607666 84 ntBASIC1.17□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.75-201ENST00000362927 97 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 RNU1-124P-201ENST00000363861 145 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 RNU6-923P-201ENST00000364753 107 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 SNORA25.8-201ENST00000364831 128 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 RNU6-275P-201ENST00000364910 107 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 SNORA70.7-201ENST00000384159 133 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.476-201ENST00000384347 108 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 RNU4-70P-201ENST00000384579 139 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.542-201ENST00000384641 111 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.552-201ENST00000384665 112 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 RNU6-918P-201ENST00000391219 106 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 AL591704.2-201ENST00000421658 181 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.16□□□□□ -2.22
COL28A1Q2UY09 AL392103.1-201ENST00000447000 198 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 RPS26P48-201ENST00000491713 339 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.797-201ENST00000515977 94 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 RNU6-1270P-201ENST00000517128 108 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 AP003484.1-201ENST00000530974 250 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 AC068338.1-201ENST00000565567 176 ntBASIC1.16□□□□□ -2.22
COL28A1Q2UY09 AL590095.2-201ENST00000604136 117 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 189.4 ms