Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 Y_RNA.136-201ENST00000363444 102 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 SNORD118-201ENST00000363593 134 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 Y_RNA.433-201ENST00000384089 102 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 SNORA27-201ENST00000384323 126 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 Y_RNA.486-201ENST00000384398 107 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 Y_RNA.587-201ENST00000391210 103 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 RNA5SP496-201ENST00000391240 109 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 RNU6-602P-201ENST00000411155 105 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.09□□□□□ -2.4
FOXA1P55317 HSPE1P25-201ENST00000455484 251 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 snoU13.2-201ENST00000459201 104 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 Y_RNA.637-201ENST00000459424 114 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 SNORD77.4-201ENST00000516158 81 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 RNU7-53P-201ENST00000516705 60 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 MIR3678-201ENST00000578455 94 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 AC006157.1-201ENST00000611750 366 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 AC122108.2-201ENST00000611946 526 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 AC013791.1-201ENST00000616619 62 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 AC078938.1-201ENST00000620993 318 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.08□□□□□ -2.4
FOXA1P55317 RNU6-1309P-201ENST00000363305 108 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 SNORA1.1-201ENST00000364671 133 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 RNA5SP117-201ENST00000365294 118 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 SNORA8.2-201ENST00000384372 139 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.08□□□□□ -2.4
FOXA1P55317 Y_RNA.602-201ENST00000410535 92 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 RPS29P24-201ENST00000486345 171 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 FGF7P4-201ENST00000509595 295 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 RNU6-693P-201ENST00000516134 107 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 MIR376A1-201ENST00000616574 68 ntBASIC0.08□□□□□ -2.4
FOXA1P55317 MIR367-201ENST00000362299 68 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 SNORA72.1-201ENST00000363485 129 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 Y_RNA.178-201ENST00000363832 102 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 Y_RNA.315-201ENST00000365117 102 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 Y_RNA.567-201ENST00000384736 106 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 Y_RNA.569-201ENST00000384749 103 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 MIR548A2-201ENST00000384956 97 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 MIR563-201ENST00000385080 79 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 SNORD12C-201ENST00000386307 89 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 RNU6-1190P-201ENST00000410811 104 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 AC073261.1-201ENST00000429409 121 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 RNU6-475P-201ENST00000516073 104 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 SNORD36C-201ENST00000516733 66 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 Y_RNA.715-201ENST00000517082 110 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.07□□□□□ -2.4
FOXA1P55317 MIR5692C2-201ENST00000577959 77 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 MIR4724-201ENST00000579485 89 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 MIR4662B-201ENST00000579498 81 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 AC007485.1-201ENST00000616755 206 ntBASIC0.07□□□□□ -2.4
FOXA1P55317 MIR30D-201ENST00000362283 70 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 Y_RNA.293-201ENST00000364908 93 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 RNU6-1283P-201ENST00000365314 105 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 Y_RNA.424-201ENST00000384063 103 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 RNU6-815P-201ENST00000384080 113 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 SNORD61-201ENST00000384252 73 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 Y_RNA.529-201ENST00000384586 119 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 MT-TF-201ENST00000387314 71 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 MIR1302-11-201ENST00000408051 138 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 MIR1302-9-201ENST00000408365 138 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 MIR1302-10-201ENST00000408734 138 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 AL138752.1-201ENST00000452964 351 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 Y_RNA.639-201ENST00000458981 102 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 RNU6-397P-201ENST00000516226 104 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 RNU2-31P-201ENST00000516954 155 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 RNU6-448P-201ENST00000517052 107 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 AC069113.3-201ENST00000521019 150 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 AC133485.4-201ENST00000561835 220 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 MIR1302-2-201ENST00000607096 138 ntBASIC0.06□□□□□ -2.4
FOXA1P55317 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.06□□□□□ -2.4
FOXA1P55317 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.06□□□□□ -2.4
FOXA1P55317 RNU4-90P-201ENST00000362773 141 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 RNU6-1272P-201ENST00000362776 107 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 Y_RNA.58-201ENST00000362807 102 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 Y_RNA.154-201ENST00000363624 102 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 RNY3P1-201ENST00000365085 102 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 SNORD24-201ENST00000383884 75 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 Y_RNA.445-201ENST00000384168 102 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 SNORD115-46-201ENST00000390982 71 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 MIR548I3-201ENST00000408378 149 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.05□□□□□ -2.4
FOXA1P55317 RNU2-11P-201ENST00000459191 187 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 MTCO2P24-201ENST00000515611 426 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 RNU6-863P-201ENST00000515989 104 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 RNU6-875P-201ENST00000516488 106 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 RNA5SP285-201ENST00000516619 119 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 RNU6-1270P-201ENST00000517128 108 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
FOXA1P55317 AC100767.1-201ENST00000528178 123 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 MIR4315-1-201ENST00000636800 73 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 AC112487.2-201ENST00000637950 304 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 MIR4315-2-201ENST00000640925 73 ntBASIC0.05□□□□□ -2.4
FOXA1P55317 Y_RNA.7-201ENST00000362352 102 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 RNU6-888P-201ENST00000363010 101 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 SNORA36.1-201ENST00000363424 132 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 RNU6-1099P-201ENST00000363533 107 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 Y_RNA.197-201ENST00000364004 102 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 Y_RNA.579-201ENST00000390939 94 ntBASIC0.04□□□□□ -2.4
FOXA1P55317 SNORD77.3-201ENST00000391113 65 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 179 ms