Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIR4251-201ENST00000635819 61 ntBASIC1□□□□□ -2.25
SOX3P41225 SNORD114-27-201ENST00000363766 70 ntBASIC0.99□□□□□ -2.25
SOX3P41225 Y_RNA.182-201ENST00000363880 111 ntBASIC0.99□□□□□ -2.25
SOX3P41225 RNA5SP48-201ENST00000363969 126 ntBASIC0.99□□□□□ -2.25
SOX3P41225 Y_RNA.233-201ENST00000364407 101 ntBASIC0.99□□□□□ -2.25
SOX3P41225 Y_RNA.435-201ENST00000384095 112 ntBASIC0.99□□□□□ -2.25
SOX3P41225 SNORD12-201ENST00000391002 90 ntBASIC0.99□□□□□ -2.25
SOX3P41225 RNU6-847P-201ENST00000411115 108 ntBASIC0.99□□□□□ -2.25
SOX3P41225 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.99□□□□□ -2.25
SOX3P41225 RPS29P28-201ENST00000446439 141 ntBASIC0.99□□□□□ -2.25
SOX3P41225 OR2A41P-201ENST00000473586 105 ntBASIC0.99□□□□□ -2.25
SOX3P41225 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.99□□□□□ -2.25
SOX3P41225 RNU6-197P-201ENST00000516680 100 ntBASIC0.99□□□□□ -2.25
SOX3P41225 MIR4791-201ENST00000607666 84 ntBASIC0.99□□□□□ -2.25
SOX3P41225 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
SOX3P41225 SNORD115-34-201ENST00000362441 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-12-201ENST00000362583 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 Y_RNA.37-201ENST00000362606 108 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-29-201ENST00000362834 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-9-201ENST00000362912 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 Y_RNA.75-201ENST00000362927 97 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-21-201ENST00000362963 81 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-14-201ENST00000363090 81 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-13-201ENST00000363358 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-41-201ENST00000363608 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-11-201ENST00000363616 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-5-201ENST00000363633 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-39-201ENST00000363694 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 RNY1P11-201ENST00000363759 113 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-4-201ENST00000363810 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-16-201ENST00000363887 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-6-201ENST00000363942 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-42-201ENST00000364273 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 RNU6-978P-201ENST00000364371 103 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-15-201ENST00000364809 81 ntBASIC0.98□□□□□ -2.25
SOX3P41225 RNU6-275P-201ENST00000364910 107 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-1-201ENST00000364961 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-26-201ENST00000365067 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-10-201ENST00000365073 81 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-43-201ENST00000365503 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-36-201ENST00000365629 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 RNU6-1336P-201ENST00000383886 109 ntBASIC0.98□□□□□ -2.25
SOX3P41225 RNA5SP247-201ENST00000411181 105 ntBASIC0.98□□□□□ -2.25
SOX3P41225 MTND5P15-201ENST00000434246 349 ntBASIC0.98□□□□□ -2.25
SOX3P41225 AF228730.3-201ENST00000436691 102 ntBASIC0.98□□□□□ -2.25
SOX3P41225 AC107297.1-201ENST00000459991 176 ntBASIC0.98□□□□□ -2.25
SOX3P41225 RNU6-861P-201ENST00000516745 106 ntBASIC0.98□□□□□ -2.25
SOX3P41225 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.98□□□□□ -2.25
SOX3P41225 Z83818.1-201ENST00000603584 150 ntBASIC0.98□□□□□ -2.25
SOX3P41225 SNORD115-40-201ENST00000606510 82 ntBASIC0.98□□□□□ -2.25
SOX3P41225 AC004792.1-201ENST00000614523 137 ntBASIC0.98□□□□□ -2.25
SOX3P41225 AC134878.1-201ENST00000619901 243 ntBASIC0.98□□□□□ -2.25
SOX3P41225 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
SOX3P41225 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
SOX3P41225 MIR96-201ENST00000362288 78 ntBASIC0.97□□□□□ -2.25
SOX3P41225 SNORA25.3-201ENST00000363205 127 ntBASIC0.97□□□□□ -2.25
SOX3P41225 RNU6-1020P-201ENST00000363684 107 ntBASIC0.97□□□□□ -2.25
SOX3P41225 Y_RNA.226-201ENST00000364337 114 ntBASIC0.97□□□□□ -2.25
SOX3P41225 RNU6-818P-201ENST00000364837 108 ntBASIC0.97□□□□□ -2.25
SOX3P41225 SNORA51.10-201ENST00000384418 136 ntBASIC0.97□□□□□ -2.25
SOX3P41225 Y_RNA.515-201ENST00000384535 112 ntBASIC0.97□□□□□ -2.25
SOX3P41225 RNU4-70P-201ENST00000384579 139 ntBASIC0.97□□□□□ -2.25
SOX3P41225 RNU6-907P-201ENST00000390924 102 ntBASIC0.97□□□□□ -2.25
SOX3P41225 SNORA40.5-201ENST00000391061 128 ntBASIC0.97□□□□□ -2.25
SOX3P41225 PCNPP3-201ENST00000393579 471 ntBASIC0.97□□□□□ -2.25
SOX3P41225 SNORA79-201ENST00000408376 140 ntBASIC0.97□□□□□ -2.25
SOX3P41225 MIR1185-1-201ENST00000408598 86 ntBASIC0.97□□□□□ -2.25
SOX3P41225 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.97□□□□□ -2.25
SOX3P41225 AC108059.2-201ENST00000434626 151 ntBASIC0.97□□□□□ -2.25
SOX3P41225 AL121914.1-201ENST00000450188 156 ntBASIC0.97□□□□□ -2.25
SOX3P41225 RNU7-21P-201ENST00000459430 62 ntBASIC0.97□□□□□ -2.25
SOX3P41225 Y_RNA.797-201ENST00000515977 94 ntBASIC0.97□□□□□ -2.25
SOX3P41225 SNORD36C-201ENST00000516733 66 ntBASIC0.97□□□□□ -2.25
SOX3P41225 RNU11-2P-201ENST00000516898 142 ntBASIC0.97□□□□□ -2.25
SOX3P41225 RNA5SP404-201ENST00000517118 132 ntBASIC0.97□□□□□ -2.25
SOX3P41225 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.97□□□□□ -2.25
SOX3P41225 SNORD114-21-201ENST00000606412 72 ntBASIC0.97□□□□□ -2.25
SOX3P41225 MIR103A2-201ENST00000362154 78 ntBASIC0.96□□□□□ -2.26
SOX3P41225 RNU1-124P-201ENST00000363861 145 ntBASIC0.96□□□□□ -2.26
SOX3P41225 SNORA24-201ENST00000384096 131 ntBASIC0.96□□□□□ -2.26
SOX3P41225 MIR19B1-201ENST00000384829 87 ntBASIC0.96□□□□□ -2.26
SOX3P41225 MIR499A-201ENST00000384903 122 ntBASIC0.96□□□□□ -2.26
SOX3P41225 MIR222-201ENST00000384992 110 ntBASIC0.96□□□□□ -2.26
SOX3P41225 SNORD77.3-201ENST00000391113 65 ntBASIC0.96□□□□□ -2.26
SOX3P41225 SNORA75.2-201ENST00000391138 150 ntBASIC0.96□□□□□ -2.26
SOX3P41225 SNORA75.3-201ENST00000391231 150 ntBASIC0.96□□□□□ -2.26
SOX3P41225 MIR1302-7-201ENST00000408841 72 ntBASIC0.96□□□□□ -2.26
SOX3P41225 MRPL35P3-201ENST00000421557 364 ntBASIC0.96□□□□□ -2.26
SOX3P41225 SEPT7P4-201ENST00000437076 306 ntBASIC0.96□□□□□ -2.26
SOX3P41225 AC002429.1-201ENST00000437672 148 ntBASIC0.96□□□□□ -2.26
SOX3P41225 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.96□□□□□ -2.26
SOX3P41225 AL392103.1-201ENST00000447000 198 ntBASIC0.96□□□□□ -2.26
SOX3P41225 RNU7-120P-201ENST00000459334 63 ntBASIC0.96□□□□□ -2.26
SOX3P41225 RPS23P4-201ENST00000487908 423 ntBASIC0.96□□□□□ -2.26
SOX3P41225 RNU6-794P-201ENST00000517261 64 ntBASIC0.96□□□□□ -2.26
SOX3P41225 SNORA81.3-201ENST00000517283 198 ntBASIC0.96□□□□□ -2.26
SOX3P41225 AP003484.1-201ENST00000530974 250 ntBASIC0.96□□□□□ -2.26
SOX3P41225 MRPS18CP4-201ENST00000535821 231 ntBASIC0.96□□□□□ -2.26
SOX3P41225 AP002392.1-201ENST00000537692 208 ntBASIC0.96□□□□□ -2.26
SOX3P41225 AC243994.1-201ENST00000618627 109 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms