Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC021506.2-201ENST00000612354 169 ntBASIC2.04□□□□□ -2.08
MSX2P35548 AL773524.1-201ENST00000614065 229 ntBASIC2.04□□□□□ -2.08
MSX2P35548 AC064859.1-201ENST00000624741 174 ntBASIC2.04□□□□□ -2.08
MSX2P35548 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
MSX2P35548 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
MSX2P35548 RNU6-640P-201ENST00000363693 105 ntBASIC2.03□□□□□ -2.08
MSX2P35548 U8.6-201ENST00000364939 135 ntBASIC2.03□□□□□ -2.08
MSX2P35548 SNORA51.5-201ENST00000384126 131 ntBASIC2.03□□□□□ -2.08
MSX2P35548 RNU4-52P-201ENST00000384209 138 ntBASIC2.03□□□□□ -2.08
MSX2P35548 MIR548D2-201ENST00000384955 97 ntBASIC2.03□□□□□ -2.08
MSX2P35548 MIR516B2-201ENST00000385190 85 ntBASIC2.03□□□□□ -2.08
MSX2P35548 RNA5SP212-201ENST00000391223 107 ntBASIC2.03□□□□□ -2.08
MSX2P35548 MIR1267-201ENST00000408723 78 ntBASIC2.03□□□□□ -2.08
MSX2P35548 RNA5SP144-201ENST00000410846 116 ntBASIC2.03□□□□□ -2.08
MSX2P35548 AL035398.1-201ENST00000430869 322 ntBASIC2.03□□□□□ -2.08
MSX2P35548 AC025033.1-201ENST00000463883 194 ntBASIC2.03□□□□□ -2.08
MSX2P35548 IGKV3-31-201ENST00000523109 329 ntBASIC2.03□□□□□ -2.08
MSX2P35548 MIR452-201ENST00000385020 85 ntBASIC2.02□□□□□ -2.09
MSX2P35548 MIR759-201ENST00000390224 91 ntBASIC2.02□□□□□ -2.09
MSX2P35548 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.02□□□□□ -2.09
MSX2P35548 AC093850.1-201ENST00000454121 251 ntBASIC2.02□□□□□ -2.09
MSX2P35548 RNU1-41P-201ENST00000516161 162 ntBASIC2.02□□□□□ -2.09
MSX2P35548 RNU1-48P-201ENST00000516400 162 ntBASIC2.02□□□□□ -2.09
MSX2P35548 RNA5SP24-201ENST00000516478 95 ntBASIC2.02□□□□□ -2.09
MSX2P35548 RNA5SP281-201ENST00000516504 135 ntBASIC2.02□□□□□ -2.09
MSX2P35548 AC068339.1-201ENST00000526965 141 ntBASIC2.02□□□□□ -2.09
MSX2P35548 MIR5009-201ENST00000578736 100 ntBASIC2.02□□□□□ -2.09
MSX2P35548 MIR3163-201ENST00000581592 73 ntBASIC2.02□□□□□ -2.09
MSX2P35548 AP001318.4-201ENST00000616637 121 ntBASIC2.02□□□□□ -2.09
MSX2P35548 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.02□□□□□ -2.09
MSX2P35548 AC021613.1-201ENST00000623880 111 ntBASIC2.02□□□□□ -2.09
MSX2P35548 AL359851.1-201ENST00000569460 4997 ntBASIC2.02□□□□□ -2.09
MSX2P35548 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
MSX2P35548 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
MSX2P35548 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
MSX2P35548 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
MSX2P35548 AC092881.1-201ENST00000638218 2733 ntBASIC2.01□□□□□ -2.09
MSX2P35548 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
MSX2P35548 RNA5SP364-201ENST00000516938 78 ntBASIC2.01□□□□□ -2.09
MSX2P35548 MIR4448-201ENST00000584360 86 ntBASIC2.01□□□□□ -2.09
MSX2P35548 MIR7843-201ENST00000622274 79 ntBASIC2.01□□□□□ -2.09
MSX2P35548 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.01□□□□□ -2.09
MSX2P35548 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
MSX2P35548 Y_RNA.369-201ENST00000365568 117 ntBASIC2□□□□□ -2.09
MSX2P35548 SNORA51.10-201ENST00000384418 136 ntBASIC2□□□□□ -2.09
MSX2P35548 MIR526A1-201ENST00000384897 85 ntBASIC2□□□□□ -2.09
MSX2P35548 MIR660-201ENST00000385235 97 ntBASIC2□□□□□ -2.09
MSX2P35548 POLR2J4-204ENST00000418424 324 ntBASIC2□□□□□ -2.09
MSX2P35548 HMGN2P38-201ENST00000423806 265 ntBASIC2□□□□□ -2.09
MSX2P35548 AL512326.2-201ENST00000426359 151 ntBASIC2□□□□□ -2.09
MSX2P35548 RNA5SP233-201ENST00000459153 113 ntBASIC2□□□□□ -2.09
MSX2P35548 RNU2-11P-201ENST00000459191 187 ntBASIC2□□□□□ -2.09
MSX2P35548 snoU13.27-201ENST00000459278 104 ntBASIC2□□□□□ -2.09
MSX2P35548 RNU7-34P-201ENST00000459394 64 ntBASIC2□□□□□ -2.09
MSX2P35548 snoU13.26-201ENST00000459452 105 ntBASIC2□□□□□ -2.09
MSX2P35548 MIR4709-201ENST00000577272 72 ntBASIC2□□□□□ -2.09
MSX2P35548 MIR4299-201ENST00000577899 72 ntBASIC2□□□□□ -2.09
MSX2P35548 AC006254.2-201ENST00000603259 279 ntBASIC2□□□□□ -2.09
MSX2P35548 AL513423.1-201ENST00000621695 132 ntBASIC2□□□□□ -2.09
MSX2P35548 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.99□□□□□ -2.09
MSX2P35548 MIR302B-201ENST00000362188 73 ntBASIC1.99□□□□□ -2.09
MSX2P35548 MIR136-201ENST00000385207 82 ntBASIC1.99□□□□□ -2.09
MSX2P35548 RNU2-7P-201ENST00000410794 178 ntBASIC1.99□□□□□ -2.09
MSX2P35548 RNA5SP100-201ENST00000410903 110 ntBASIC1.99□□□□□ -2.09
MSX2P35548 RNA5SP59-201ENST00000410922 110 ntBASIC1.99□□□□□ -2.09
MSX2P35548 AC244636.1-201ENST00000421152 228 ntBASIC1.99□□□□□ -2.09
MSX2P35548 RPL23AP6-201ENST00000446637 472 ntBASIC1.99□□□□□ -2.09
MSX2P35548 RNU7-45P-201ENST00000459460 63 ntBASIC1.99□□□□□ -2.09
MSX2P35548 UBL5P3-201ENST00000475112 231 ntBASIC1.99□□□□□ -2.09
MSX2P35548 RPS23P4-201ENST00000487908 423 ntBASIC1.99□□□□□ -2.09
MSX2P35548 RNU2-13P-201ENST00000515909 113 ntBASIC1.99□□□□□ -2.09
MSX2P35548 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.99□□□□□ -2.09
MSX2P35548 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.99□□□□□ -2.09
MSX2P35548 AL627230.6-201ENST00000611129 280 ntBASIC1.99□□□□□ -2.09
MSX2P35548 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.99□□□□□ -2.09
MSX2P35548 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.99□□□□□ -2.09
MSX2P35548 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.99□□□□□ -2.09
MSX2P35548 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
MSX2P35548 SNORA1.2-201ENST00000365189 134 ntBASIC1.98□□□□□ -2.09
MSX2P35548 Y_RNA.370-201ENST00000365589 108 ntBASIC1.98□□□□□ -2.09
MSX2P35548 SNORA24-201ENST00000384096 131 ntBASIC1.98□□□□□ -2.09
MSX2P35548 SNORA19.1-201ENST00000410656 129 ntBASIC1.98□□□□□ -2.09
MSX2P35548 PGBD4P5-201ENST00000445958 426 ntBASIC1.98□□□□□ -2.09
MSX2P35548 RNA5SP481-201ENST00000516814 122 ntBASIC1.98□□□□□ -2.09
MSX2P35548 AC004812.1-201ENST00000540773 146 ntBASIC1.98□□□□□ -2.09
MSX2P35548 AC087741.2-201ENST00000619415 172 ntBASIC1.98□□□□□ -2.09
MSX2P35548 AC095038.3-201ENST00000634439 195 ntBASIC1.98□□□□□ -2.09
MSX2P35548 AL162726.3-218ENST00000636401 95 ntBASIC1.98□□□□□ -2.09
MSX2P35548 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
MSX2P35548 RNA5SP289-201ENST00000362332 137 ntBASIC1.97□□□□□ -2.09
MSX2P35548 RNU6-1113P-201ENST00000384348 107 ntBASIC1.97□□□□□ -2.09
MSX2P35548 Y_RNA.531-201ENST00000384589 121 ntBASIC1.97□□□□□ -2.09
MSX2P35548 MIR590-201ENST00000385008 97 ntBASIC1.97□□□□□ -2.09
MSX2P35548 SNORD28B-201ENST00000390993 75 ntBASIC1.97□□□□□ -2.09
MSX2P35548 RNY4P30-201ENST00000410216 95 ntBASIC1.97□□□□□ -2.09
MSX2P35548 RN7SKP192-201ENST00000411291 327 ntBASIC1.97□□□□□ -2.09
MSX2P35548 AL022718.1-201ENST00000412004 84 ntBASIC1.97□□□□□ -2.09
MSX2P35548 Z98742.3-201ENST00000418637 326 ntBASIC1.97□□□□□ -2.09
MSX2P35548 AC107297.1-201ENST00000459991 176 ntBASIC1.97□□□□□ -2.09
MSX2P35548 RNU7-6P-201ENST00000516845 62 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 136.5 ms