Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.42□□□□□ -2.34
COL5A3P25940 RNU6-958P-201ENST00000516995 106 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.42□□□□□ -2.34
COL5A3P25940 AC005357.1-201ENST00000588399 301 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 AC006504.6-201ENST00000590142 199 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 AC037487.3-201ENST00000606668 112 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 AL008718.3-201ENST00000610217 321 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.42□□□□□ -2.34
COL5A3P25940 SNORD14E-201ENST00000364009 85 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 SNORD95.1-201ENST00000364099 68 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 Y_RNA.376-201ENST00000365638 108 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 SNORD72-201ENST00000390994 80 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 MIR1302-6-201ENST00000408466 90 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 MIR548O-201ENST00000408583 114 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNU6-1203P-201ENST00000410703 110 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNU2-64P-201ENST00000411315 191 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 BTF3P11-201ENST00000426582 477 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AC244023.1-201ENST00000426884 112 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNU7-21P-201ENST00000459430 62 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.41□□□□□ -2.34
COL5A3P25940 SNORD111.1-201ENST00000516421 86 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNU6-453P-201ENST00000516819 85 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNU6-365P-201ENST00000517113 106 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AC012433.1-201ENST00000588916 398 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AL355297.3-201ENST00000604082 446 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AC242498.1-201ENST00000604134 111 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AC243994.1-201ENST00000618627 109 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 Y_RNA.14-201ENST00000362415 103 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 Y_RNA.47-201ENST00000362697 108 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 SNORA1.2-201ENST00000365189 134 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNU6-290P-201ENST00000365212 101 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 MIR626-201ENST00000385032 94 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 SNORD41-201ENST00000386967 70 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 SNORD28B-201ENST00000390993 75 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNA5SP496-201ENST00000391240 109 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 MIR942-201ENST00000401111 86 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 MIR1302-7-201ENST00000408841 72 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.41□□□□□ -2.34
COL5A3P25940 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.41□□□□□ -2.34
COL5A3P25940 NDUFA4P2-201ENST00000489989 244 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 SCARNA8-201ENST00000515924 131 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 Y_RNA.666-201ENST00000516187 112 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNU6-830P-201ENST00000516353 107 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 RNA5SP255-201ENST00000516370 107 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.41□□□□□ -2.34
COL5A3P25940 MIR8055-201ENST00000610739 97 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AL391903.3-201ENST00000612158 163 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 AP001282.2-201ENST00000616149 309 ntBASIC0.41□□□□□ -2.34
COL5A3P25940 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.4□□□□□ -2.34
COL5A3P25940 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.4□□□□□ -2.35
COL5A3P25940 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
COL5A3P25940 RNU6-211P-201ENST00000384047 107 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 SNORA2B-201ENST00000384583 137 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 MT-TW-201ENST00000387382 68 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 RNU2-55P-201ENST00000411146 174 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 U7.7-201ENST00000459276 60 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 AC007751.1-201ENST00000529260 376 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
COL5A3P25940 MIR4643-201ENST00000577473 78 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 MIR4791-201ENST00000607666 84 ntBASIC0.4□□□□□ -2.35
COL5A3P25940 Y_RNA.145-201ENST00000363527 102 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.176-201ENST00000363815 109 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 SNORD115-28-201ENST00000363931 81 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 U8.5-201ENST00000364528 136 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.416-201ENST00000384014 113 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.486-201ENST00000384398 107 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 SNORD12-201ENST00000391002 90 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 SNORA75.2-201ENST00000391138 150 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 SNORA75.3-201ENST00000391231 150 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 SNORD99-201ENST00000408612 74 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 RNU6-847P-201ENST00000411115 108 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 HMGN2P32-201ENST00000444648 269 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 RNU7-67P-201ENST00000459003 62 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 snoU13.11-201ENST00000459219 104 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 snoU13.21-201ENST00000459368 105 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 RNU6-504P-201ENST00000516568 104 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 MIR4305-201ENST00000583252 102 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.812-201ENST00000610788 101 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.784-201ENST00000613803 101 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.787-201ENST00000616522 101 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.780-201ENST00000617336 101 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 Y_RNA.801-201ENST00000619005 101 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 AC134878.1-201ENST00000619901 243 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 MTND1P7-201ENST00000632801 297 ntBASIC0.39□□□□□ -2.35
COL5A3P25940 MIR103A2-201ENST00000362154 78 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.24-201ENST00000362508 103 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.82-201ENST00000363000 102 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.92-201ENST00000363043 102 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.117-201ENST00000363294 101 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.217-201ENST00000364214 105 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.235-201ENST00000364412 102 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.237-201ENST00000364439 102 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.306-201ENST00000365015 102 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.308-201ENST00000365043 101 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.312-201ENST00000365089 102 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.322-201ENST00000365151 102 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 RNU6-472P-201ENST00000384299 107 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 SNORD38B-201ENST00000384690 67 ntBASIC0.38□□□□□ -2.35
COL5A3P25940 Y_RNA.650-201ENST00000459002 102 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms