Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MIR1273G-201ENST00000577677 100 ntBASIC0.41□□□□□ -2.34
BDNFP23560 Y_RNA.802-201ENST00000614892 130 ntBASIC0.41□□□□□ -2.34
BDNFP23560 MIRLET7D-201ENST00000362263 87 ntBASIC0.4□□□□□ -2.35
BDNFP23560 Y_RNA.37-201ENST00000362606 108 ntBASIC0.4□□□□□ -2.35
BDNFP23560 SNORD18A-201ENST00000363753 72 ntBASIC0.4□□□□□ -2.35
BDNFP23560 RNU6-1327P-201ENST00000365302 105 ntBASIC0.4□□□□□ -2.35
BDNFP23560 RNY1P8-201ENST00000383970 114 ntBASIC0.4□□□□□ -2.35
BDNFP23560 MIR518F-201ENST00000384973 87 ntBASIC0.4□□□□□ -2.35
BDNFP23560 BTF3P11-201ENST00000426582 477 ntBASIC0.4□□□□□ -2.35
BDNFP23560 MTCO2P12-201ENST00000427426 682 ntBASIC0.4□□□□□ -2.35
BDNFP23560 Y_RNA.637-201ENST00000459424 114 ntBASIC0.4□□□□□ -2.35
BDNFP23560 RNU6-1143P-201ENST00000516125 104 ntBASIC0.4□□□□□ -2.35
BDNFP23560 AC100767.1-201ENST00000528178 123 ntBASIC0.4□□□□□ -2.35
BDNFP23560 AC006006.1-201ENST00000603082 144 ntBASIC0.4□□□□□ -2.35
BDNFP23560 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.4□□□□□ -2.35
BDNFP23560 Y_RNA.389-201ENST00000383924 113 ntBASIC0.39□□□□□ -2.35
BDNFP23560 RNU6-102P-201ENST00000384485 104 ntBASIC0.39□□□□□ -2.35
BDNFP23560 Y_RNA.587-201ENST00000391210 103 ntBASIC0.39□□□□□ -2.35
BDNFP23560 RNU7-96P-201ENST00000459535 64 ntBASIC0.39□□□□□ -2.35
BDNFP23560 SNORA68.3-201ENST00000515906 83 ntBASIC0.39□□□□□ -2.35
BDNFP23560 MIR8055-201ENST00000610739 97 ntBASIC0.39□□□□□ -2.35
BDNFP23560 Y_RNA.804-201ENST00000615262 101 ntBASIC0.39□□□□□ -2.35
BDNFP23560 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
BDNFP23560 RNY3P14-201ENST00000384309 102 ntBASIC0.38□□□□□ -2.35
BDNFP23560 MIR588-201ENST00000384900 83 ntBASIC0.38□□□□□ -2.35
BDNFP23560 MIR125B2-201ENST00000385128 89 ntBASIC0.38□□□□□ -2.35
BDNFP23560 MT-TF-201ENST00000387314 71 ntBASIC0.38□□□□□ -2.35
BDNFP23560 RNU6-823P-201ENST00000391042 103 ntBASIC0.38□□□□□ -2.35
BDNFP23560 RNU6-1165P-201ENST00000410119 107 ntBASIC0.38□□□□□ -2.35
BDNFP23560 RNA5SP261-201ENST00000410536 106 ntBASIC0.38□□□□□ -2.35
BDNFP23560 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.38□□□□□ -2.35
BDNFP23560 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.38□□□□□ -2.35
BDNFP23560 AC091959.1-201ENST00000495857 238 ntBASIC0.38□□□□□ -2.35
BDNFP23560 MTCO2P24-201ENST00000515611 426 ntBASIC0.38□□□□□ -2.35
BDNFP23560 SNORA25.12-201ENST00000516202 82 ntBASIC0.38□□□□□ -2.35
BDNFP23560 RNU6-988P-201ENST00000519081 107 ntBASIC0.38□□□□□ -2.35
BDNFP23560 AP003733.2-201ENST00000529409 171 ntBASIC0.38□□□□□ -2.35
BDNFP23560 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.38□□□□□ -2.35
BDNFP23560 AC020891.4-201ENST00000605745 93 ntBASIC0.38□□□□□ -2.35
BDNFP23560 AC010332.2-201ENST00000613083 1904 ntBASIC0.38□□□□□ -2.35
BDNFP23560 RNA5SP325-201ENST00000363756 130 ntBASIC0.37□□□□□ -2.35
BDNFP23560 SNORD42.2-201ENST00000365570 69 ntBASIC0.37□□□□□ -2.35
BDNFP23560 Y_RNA.486-201ENST00000384398 107 ntBASIC0.37□□□□□ -2.35
BDNFP23560 SNORD77.3-201ENST00000391113 65 ntBASIC0.37□□□□□ -2.35
BDNFP23560 SNORD100-201ENST00000408573 76 ntBASIC0.37□□□□□ -2.35
BDNFP23560 AC090844.1-201ENST00000422019 156 ntBASIC0.37□□□□□ -2.35
BDNFP23560 AL731563.1-201ENST00000442202 214 ntBASIC0.37□□□□□ -2.35
BDNFP23560 AC090897.1-201ENST00000580909 226 ntBASIC0.37□□□□□ -2.35
BDNFP23560 RAC1P9-201ENST00000604990 392 ntBASIC0.37□□□□□ -2.35
BDNFP23560 MIR924-201ENST00000638017 53 ntBASIC0.37□□□□□ -2.35
BDNFP23560 Y_RNA.152-201ENST00000363578 100 ntBASIC0.36□□□□□ -2.35
BDNFP23560 Y_RNA.410-201ENST00000383992 113 ntBASIC0.36□□□□□ -2.35
BDNFP23560 Y_RNA.645-201ENST00000391229 102 ntBASIC0.36□□□□□ -2.35
BDNFP23560 SNORA40.8-201ENST00000411034 126 ntBASIC0.36□□□□□ -2.35
BDNFP23560 RNU2-55P-201ENST00000411146 174 ntBASIC0.36□□□□□ -2.35
BDNFP23560 PMCHL1-202ENST00000423102 261 ntBASIC0.36□□□□□ -2.35
BDNFP23560 Y_RNA.631-201ENST00000459607 101 ntBASIC0.36□□□□□ -2.35
BDNFP23560 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.36□□□□□ -2.35
BDNFP23560 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.36□□□□□ -2.35
BDNFP23560 MIR369-201ENST00000362155 70 ntBASIC0.35□□□□□ -2.35
BDNFP23560 RNU6-888P-201ENST00000363010 101 ntBASIC0.35□□□□□ -2.35
BDNFP23560 RNU6-1099P-201ENST00000363533 107 ntBASIC0.35□□□□□ -2.35
BDNFP23560 RNA5SP117-201ENST00000365294 118 ntBASIC0.35□□□□□ -2.35
BDNFP23560 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
BDNFP23560 SNORA8.3-201ENST00000384679 139 ntBASIC0.35□□□□□ -2.35
BDNFP23560 RNU6-679P-201ENST00000391003 106 ntBASIC0.35□□□□□ -2.35
BDNFP23560 snoU13.2-201ENST00000459201 104 ntBASIC0.35□□□□□ -2.35
BDNFP23560 RNU7-185P-201ENST00000459215 60 ntBASIC0.35□□□□□ -2.35
BDNFP23560 SNORA27.4-201ENST00000516650 95 ntBASIC0.35□□□□□ -2.35
BDNFP23560 AC007751.1-201ENST00000529260 376 ntBASIC0.35□□□□□ -2.35
BDNFP23560 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.35□□□□□ -2.35
BDNFP23560 Y_RNA.494-201ENST00000384432 111 ntBASIC0.34□□□□□ -2.36
BDNFP23560 AC015818.7-201ENST00000428754 109 ntBASIC0.34□□□□□ -2.36
BDNFP23560 AC087499.7-201ENST00000441958 109 ntBASIC0.34□□□□□ -2.36
BDNFP23560 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.34□□□□□ -2.36
BDNFP23560 RNU6-863P-201ENST00000515989 104 ntBASIC0.34□□□□□ -2.36
BDNFP23560 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.34□□□□□ -2.36
BDNFP23560 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.34□□□□□ -2.36
BDNFP23560 MIR6740-201ENST00000618268 113 ntBASIC0.34□□□□□ -2.36
BDNFP23560 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.34□□□□□ -2.36
BDNFP23560 Y_RNA.31-201ENST00000362574 102 ntBASIC0.33□□□□□ -2.36
BDNFP23560 Y_RNA.276-201ENST00000364732 109 ntBASIC0.33□□□□□ -2.36
BDNFP23560 MIR518A1-201ENST00000385068 85 ntBASIC0.33□□□□□ -2.36
BDNFP23560 RNU6-913P-201ENST00000390913 95 ntBASIC0.33□□□□□ -2.36
BDNFP23560 MIR548I3-201ENST00000408378 149 ntBASIC0.33□□□□□ -2.36
BDNFP23560 RNU2-70P-201ENST00000410718 179 ntBASIC0.33□□□□□ -2.36
BDNFP23560 RPL39P25-201ENST00000449384 154 ntBASIC0.33□□□□□ -2.36
BDNFP23560 RNU7-102P-201ENST00000458948 62 ntBASIC0.33□□□□□ -2.36
BDNFP23560 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.33□□□□□ -2.36
BDNFP23560 RNU7-156P-201ENST00000517214 74 ntBASIC0.33□□□□□ -2.36
BDNFP23560 AC022523.2-201ENST00000561045 150 ntBASIC0.33□□□□□ -2.36
BDNFP23560 SNORD92-201ENST00000585078 85 ntBASIC0.33□□□□□ -2.36
BDNFP23560 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
BDNFP23560 MIR330-201ENST00000362196 94 ntBASIC0.32□□□□□ -2.36
BDNFP23560 Y_RNA.28-201ENST00000362554 111 ntBASIC0.32□□□□□ -2.36
BDNFP23560 RNA5SP457-201ENST00000363657 124 ntBASIC0.32□□□□□ -2.36
BDNFP23560 Y_RNA.419-201ENST00000384041 102 ntBASIC0.32□□□□□ -2.36
BDNFP23560 RNU6-121P-201ENST00000410525 99 ntBASIC0.32□□□□□ -2.36
BDNFP23560 AC002350.1-201ENST00000490759 375 ntBASIC0.32□□□□□ -2.36
BDNFP23560 RNU6-1299P-201ENST00000516316 100 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms