Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.51□□□□□ -2.33
MSH4O15457 MTND4LP30-201ENST00000454092 297 ntBASIC0.51□□□□□ -2.33
MSH4O15457 SCARNA8-201ENST00000515924 131 ntBASIC0.51□□□□□ -2.33
MSH4O15457 RNU6-693P-201ENST00000516134 107 ntBASIC0.51□□□□□ -2.33
MSH4O15457 SNORD77.4-201ENST00000516158 81 ntBASIC0.51□□□□□ -2.33
MSH4O15457 RNU4-54P-201ENST00000516428 129 ntBASIC0.51□□□□□ -2.33
MSH4O15457 RNA5SP121-201ENST00000516537 101 ntBASIC0.51□□□□□ -2.33
MSH4O15457 RNU6-958P-201ENST00000516995 106 ntBASIC0.51□□□□□ -2.33
MSH4O15457 RNU6-1270P-201ENST00000517128 108 ntBASIC0.51□□□□□ -2.33
MSH4O15457 Y_RNA.44-201ENST00000362676 108 ntBASIC0.5□□□□□ -2.33
MSH4O15457 SNORD114-23-201ENST00000363536 72 ntBASIC0.5□□□□□ -2.33
MSH4O15457 SNORD115-28-201ENST00000363931 81 ntBASIC0.5□□□□□ -2.33
MSH4O15457 Y_RNA.229-201ENST00000364347 113 ntBASIC0.5□□□□□ -2.33
MSH4O15457 SNORD61-201ENST00000384252 73 ntBASIC0.5□□□□□ -2.33
MSH4O15457 Y_RNA.483-201ENST00000384380 101 ntBASIC0.5□□□□□ -2.33
MSH4O15457 RNU6-125P-201ENST00000384505 107 ntBASIC0.5□□□□□ -2.33
MSH4O15457 SNORA8.3-201ENST00000384679 139 ntBASIC0.5□□□□□ -2.33
MSH4O15457 RNU6-713P-201ENST00000384761 107 ntBASIC0.5□□□□□ -2.33
MSH4O15457 RNA5SP222-201ENST00000411039 105 ntBASIC0.5□□□□□ -2.33
MSH4O15457 Y_RNA.622-201ENST00000411091 108 ntBASIC0.5□□□□□ -2.33
MSH4O15457 RNU6-847P-201ENST00000411115 108 ntBASIC0.5□□□□□ -2.33
MSH4O15457 RNU7-67P-201ENST00000459003 62 ntBASIC0.5□□□□□ -2.33
MSH4O15457 RNU2-13P-201ENST00000515909 113 ntBASIC0.5□□□□□ -2.33
MSH4O15457 RNU6-453P-201ENST00000516819 85 ntBASIC0.5□□□□□ -2.33
MSH4O15457 AC100767.1-201ENST00000528178 123 ntBASIC0.5□□□□□ -2.33
MSH4O15457 AC018659.1-201ENST00000551083 169 ntBASIC0.5□□□□□ -2.33
MSH4O15457 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.5□□□□□ -2.33
MSH4O15457 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.49□□□□□ -2.33
MSH4O15457 Y_RNA.11-201ENST00000362375 109 ntBASIC0.49□□□□□ -2.33
MSH4O15457 SNORD45.3-201ENST00000363836 72 ntBASIC0.49□□□□□ -2.33
MSH4O15457 RNU6-1138P-201ENST00000365359 106 ntBASIC0.49□□□□□ -2.33
MSH4O15457 RNU6-945P-201ENST00000383947 107 ntBASIC0.49□□□□□ -2.33
MSH4O15457 MIR518F-201ENST00000384973 87 ntBASIC0.49□□□□□ -2.33
MSH4O15457 MIR626-201ENST00000385032 94 ntBASIC0.49□□□□□ -2.33
MSH4O15457 MIR526A2-201ENST00000390198 65 ntBASIC0.49□□□□□ -2.33
MSH4O15457 RNU6-1228P-201ENST00000391014 107 ntBASIC0.49□□□□□ -2.33
MSH4O15457 RNU6-938P-201ENST00000411285 103 ntBASIC0.49□□□□□ -2.33
MSH4O15457 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.49□□□□□ -2.33
MSH4O15457 AL138752.1-201ENST00000452964 351 ntBASIC0.49□□□□□ -2.33
MSH4O15457 SNORD36C-201ENST00000516733 66 ntBASIC0.49□□□□□ -2.33
MSH4O15457 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.49□□□□□ -2.33
MSH4O15457 AL589743.1-201ENST00000551932 2712 ntBASIC0.48□□□□□ -2.33
MSH4O15457 Y_RNA.91-201ENST00000363042 107 ntBASIC0.48□□□□□ -2.33
MSH4O15457 snoU2_19.4-201ENST00000364329 80 ntBASIC0.48□□□□□ -2.33
MSH4O15457 Y_RNA.326-201ENST00000365176 113 ntBASIC0.48□□□□□ -2.33
MSH4O15457 SNORA36.2-201ENST00000384004 127 ntBASIC0.48□□□□□ -2.33
MSH4O15457 MIR606-201ENST00000384851 96 ntBASIC0.48□□□□□ -2.33
MSH4O15457 MIR548A2-201ENST00000384956 97 ntBASIC0.48□□□□□ -2.33
MSH4O15457 SNORD83.1-201ENST00000411362 77 ntBASIC0.48□□□□□ -2.33
MSH4O15457 HMGN1P33-201ENST00000432945 451 ntBASIC0.48□□□□□ -2.33
MSH4O15457 AC107297.1-201ENST00000459991 176 ntBASIC0.48□□□□□ -2.33
MSH4O15457 SNORA18.4-201ENST00000516440 124 ntBASIC0.48□□□□□ -2.33
MSH4O15457 Y_RNA.720-201ENST00000517166 92 ntBASIC0.48□□□□□ -2.33
MSH4O15457 AP000753.3-201ENST00000604083 169 ntBASIC0.48□□□□□ -2.33
MSH4O15457 AC134878.1-201ENST00000619901 243 ntBASIC0.48□□□□□ -2.33
MSH4O15457 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.48□□□□□ -2.33
MSH4O15457 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
MSH4O15457 MIR377-201ENST00000362145 69 ntBASIC0.47□□□□□ -2.33
MSH4O15457 MIR342-201ENST00000362212 99 ntBASIC0.47□□□□□ -2.33
MSH4O15457 Y_RNA.37-201ENST00000362606 108 ntBASIC0.47□□□□□ -2.33
MSH4O15457 Y_RNA.416-201ENST00000384014 113 ntBASIC0.47□□□□□ -2.33
MSH4O15457 Y_RNA.461-201ENST00000384263 103 ntBASIC0.47□□□□□ -2.33
MSH4O15457 MT-TN-201ENST00000387400 73 ntBASIC0.47□□□□□ -2.33
MSH4O15457 RNU6-913P-201ENST00000390913 95 ntBASIC0.47□□□□□ -2.33
MSH4O15457 MIR1302-6-201ENST00000408466 90 ntBASIC0.47□□□□□ -2.33
MSH4O15457 Y_RNA.590-201ENST00000410140 107 ntBASIC0.47□□□□□ -2.33
MSH4O15457 AC244023.1-201ENST00000426884 112 ntBASIC0.47□□□□□ -2.33
MSH4O15457 AF228730.3-201ENST00000436691 102 ntBASIC0.47□□□□□ -2.33
MSH4O15457 Y_RNA.679-201ENST00000516416 91 ntBASIC0.47□□□□□ -2.33
MSH4O15457 RNU6-365P-201ENST00000517113 106 ntBASIC0.47□□□□□ -2.33
MSH4O15457 AL442663.2-201ENST00000554385 511 ntBASIC0.47□□□□□ -2.33
MSH4O15457 AC008737.2-201ENST00000599446 118 ntBASIC0.47□□□□□ -2.33
MSH4O15457 AC242498.1-201ENST00000604134 111 ntBASIC0.47□□□□□ -2.33
MSH4O15457 MIR8062-201ENST00000621515 85 ntBASIC0.47□□□□□ -2.33
MSH4O15457 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.47□□□□□ -2.33
MSH4O15457 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.46□□□□□ -2.34
MSH4O15457 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-34-201ENST00000362441 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-12-201ENST00000362583 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 Y_RNA.54-201ENST00000362766 105 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-29-201ENST00000362834 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-9-201ENST00000362912 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-21-201ENST00000362963 81 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-14-201ENST00000363090 81 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-13-201ENST00000363358 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-41-201ENST00000363608 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-11-201ENST00000363616 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-5-201ENST00000363633 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-39-201ENST00000363694 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-4-201ENST00000363810 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-16-201ENST00000363887 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-6-201ENST00000363942 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-42-201ENST00000364273 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-15-201ENST00000364809 81 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-1-201ENST00000364961 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-26-201ENST00000365067 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-10-201ENST00000365073 81 ntBASIC0.46□□□□□ -2.34
MSH4O15457 RNU6-580P-201ENST00000365159 107 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-43-201ENST00000365503 82 ntBASIC0.46□□□□□ -2.34
MSH4O15457 SNORD115-36-201ENST00000365629 82 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms