Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6-693P-201ENST00000516134 107 ntBASIC0.56□□□□□ -2.32
FOXA2Q9Y261 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
FOXA2Q9Y261 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.56□□□□□ -2.32
FOXA2Q9Y261 MIR4771-2-201ENST00000577758 74 ntBASIC0.56□□□□□ -2.32
FOXA2Q9Y261 MIR4680-201ENST00000580906 66 ntBASIC0.56□□□□□ -2.32
FOXA2Q9Y261 MIR4771-1-201ENST00000582617 74 ntBASIC0.56□□□□□ -2.32
FOXA2Q9Y261 AL590095.2-201ENST00000604136 117 ntBASIC0.56□□□□□ -2.32
FOXA2Q9Y261 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.55□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.64-201ENST00000362845 102 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 RNU6-797P-201ENST00000363101 109 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.238-201ENST00000364441 102 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 SNORA24-201ENST00000384096 131 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.486-201ENST00000384398 107 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.604-201ENST00000410574 102 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 RNU7-62P-201ENST00000458856 62 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 snoU13.21-201ENST00000459368 105 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 MTCO2P24-201ENST00000515611 426 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 RNU6-365P-201ENST00000517113 106 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AC100767.1-201ENST00000528178 123 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AP003733.2-201ENST00000529409 171 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AC018659.1-201ENST00000551083 169 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AC133485.1-201ENST00000567176 124 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AC138907.6-201ENST00000568401 126 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 MIR151B-201ENST00000584249 96 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 AP000942.4-201ENST00000604811 241 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 RMST_2.1-201ENST00000617263 136 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 snoU18.1-201ENST00000629629 71 ntBASIC0.55□□□□□ -2.32
FOXA2Q9Y261 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.55□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.202-201ENST00000364083 110 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.217-201ENST00000364214 105 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 RNU4-10P-201ENST00000364383 140 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 RNU6-945P-201ENST00000383947 107 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.494-201ENST00000384432 111 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 MIR508-201ENST00000384857 115 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 SNORA40.5-201ENST00000391061 128 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 RNU6-733P-201ENST00000410759 104 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.641-201ENST00000459414 105 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 RNU7-53P-201ENST00000516705 60 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 RNU6-1137P-201ENST00000517073 99 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 AL008718.3-201ENST00000610217 321 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 MIR6788-201ENST00000618842 66 ntBASIC0.54□□□□□ -2.32
FOXA2Q9Y261 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.54□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.16-201ENST00000362421 102 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.84-201ENST00000363011 104 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.153-201ENST00000363615 91 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.226-201ENST00000364337 114 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 SNORA8.3-201ENST00000384679 139 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 SNORD38B-201ENST00000384690 67 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 MIR520H-201ENST00000385126 88 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 MIR1287-201ENST00000408492 90 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AC113618.1-201ENST00000416747 285 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AL731563.1-201ENST00000442202 214 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AC007751.1-201ENST00000529260 376 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AP003484.1-201ENST00000530974 250 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AC004817.2-201ENST00000561794 651 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 MIR5688-201ENST00000580619 83 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.53□□□□□ -2.32
FOXA2Q9Y261 AL078603.1-201ENST00000603824 313 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 SNORD38B-202ENST00000625943 69 ntBASIC0.53□□□□□ -2.32
FOXA2Q9Y261 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.53□□□□□ -2.32
FOXA2Q9Y261 Y_RNA.37-201ENST00000362606 108 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 SNORA63C-201ENST00000364578 129 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 SNORA27-201ENST00000384323 126 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
FOXA2Q9Y261 MIR548J-201ENST00000408833 112 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 AC090844.1-201ENST00000422019 156 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 SNORA18.4-201ENST00000516440 124 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 RNU6-1270P-201ENST00000517128 108 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 AL356055.1-201ENST00000602528 446 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.52□□□□□ -2.33
FOXA2Q9Y261 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.52□□□□□ -2.33
FOXA2Q9Y261 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
FOXA2Q9Y261 UBE2WP1-201ENST00000362030 340 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 Y_RNA.24-201ENST00000362508 103 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 MIR573-201ENST00000384964 99 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 SNORA26-201ENST00000391286 122 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 RNU6-985P-201ENST00000410182 104 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 RNA5SP247-201ENST00000411181 105 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 AC015818.7-201ENST00000428754 109 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 MTCYBP6-201ENST00000441810 138 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 AC087499.7-201ENST00000441958 109 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 MTND5P22-201ENST00000458380 195 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 RNU7-73P-201ENST00000458743 63 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 SERF1AP1-201ENST00000514575 187 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 RNU6-1338P-201ENST00000516328 91 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 RNU6-504P-201ENST00000516568 104 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 Y_RNA.701-201ENST00000516812 110 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 SCARNA24.2-201ENST00000516968 130 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 DEFB108E-201ENST00000524692 240 ntBASIC0.51□□□□□ -2.33
FOXA2Q9Y261 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA2Q9Y261 RNU6-369P-201ENST00000362515 102 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 SNORA33.2-201ENST00000365413 134 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 SNORD24-201ENST00000383884 75 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 RNU6-211P-201ENST00000384047 107 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 RNU6-1237P-201ENST00000384777 107 ntBASIC0.5□□□□□ -2.33
FOXA2Q9Y261 MIR518F-201ENST00000384973 87 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms