Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC211469.2-201ENST00000605461 205 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 U6.104-201ENST00000637979 90 ntBASIC0.93□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.122-201ENST00000363331 96 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 snoU2_19.4-201ENST00000364329 80 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 MT-TT-201ENST00000387460 66 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 MIR942-201ENST00000401111 86 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 MIR1287-201ENST00000408492 90 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.590-201ENST00000410140 107 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 RNU6-847P-201ENST00000411115 108 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 RNA5SP247-201ENST00000411181 105 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 MIR4643-201ENST00000577473 78 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 AC012433.1-201ENST00000588916 398 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 AC243994.1-201ENST00000618627 109 ntBASIC0.92□□□□□ -2.26
CPSF3Q9UKF6 RNU6-1309P-201ENST00000363305 108 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 RNU6-484P-201ENST00000384016 107 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 SNORD61-201ENST00000384252 73 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 RNU6-1067P-201ENST00000384752 107 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 RNU6-938P-201ENST00000411285 103 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 RNU2-64P-201ENST00000411315 191 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 SCARNA8-201ENST00000515924 131 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 AC036111.3-201ENST00000526389 112 ntBASIC0.91□□□□□ -2.26
CPSF3Q9UKF6 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.26
CPSF3Q9UKF6 Y_RNA.149-201ENST00000363558 117 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-28-201ENST00000363931 81 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.304-201ENST00000365011 112 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 SNORD24-201ENST00000383884 75 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 RNA5SP95-201ENST00000410319 137 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 RNU2-38P-201ENST00000410856 79 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 RNU6-693P-201ENST00000516134 107 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 RNU6-453P-201ENST00000516819 85 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 RNU6-1270P-201ENST00000517128 108 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 MIR4653-201ENST00000585107 83 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 RNU6-94P-201ENST00000607728 107 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 AC106800.4-201ENST00000614905 153 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 AL365265.1-201ENST00000621045 234 ntBASIC0.9□□□□□ -2.27
CPSF3Q9UKF6 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-34-201ENST00000362441 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-12-201ENST00000362583 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-29-201ENST00000362834 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.66-201ENST00000362862 102 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-9-201ENST00000362912 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-21-201ENST00000362963 81 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.91-201ENST00000363042 107 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-14-201ENST00000363090 81 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-13-201ENST00000363358 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-41-201ENST00000363608 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-11-201ENST00000363616 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-5-201ENST00000363633 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-39-201ENST00000363694 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-4-201ENST00000363810 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-16-201ENST00000363887 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-6-201ENST00000363942 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-42-201ENST00000364273 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.241-201ENST00000364470 117 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-15-201ENST00000364809 81 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-1-201ENST00000364961 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-26-201ENST00000365067 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-10-201ENST00000365073 81 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.352-201ENST00000365439 102 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-43-201ENST00000365503 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-36-201ENST00000365629 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORA24-201ENST00000384096 131 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 RNU6-613P-201ENST00000410412 108 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 RPS29P1-201ENST00000465274 159 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 RNA5SP255-201ENST00000516370 107 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.679-201ENST00000516416 91 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 RNU6-126P-201ENST00000516685 103 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 SNORD115-40-201ENST00000606510 82 ntBASIC0.89□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.37-201ENST00000362606 108 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 RNU6-888P-201ENST00000363010 101 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 RNU6-653P-201ENST00000363074 106 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.133-201ENST00000363428 110 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.277-201ENST00000364754 102 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 SNRPGP8-201ENST00000454064 226 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 RNU6-351P-201ENST00000516097 100 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 RNU6-1299P-201ENST00000516316 100 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 SCARNA15.1-201ENST00000516384 125 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 SNORA18.4-201ENST00000516440 124 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 RNU6-365P-201ENST00000517113 106 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 AC011921.3-201ENST00000605540 361 ntBASIC0.88□□□□□ -2.27
CPSF3Q9UKF6 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.76-201ENST00000362931 109 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 SNORD114-2-201ENST00000363953 78 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.634-201ENST00000364811 113 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.416-201ENST00000384014 113 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 MIR608-201ENST00000384820 100 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 MIR568-201ENST00000385036 95 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 MIR616-201ENST00000385293 97 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 RNU6-381P-201ENST00000391259 108 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 AL606845.1-201ENST00000404881 255 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.622-201ENST00000411091 108 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 RNU2-55P-201ENST00000411146 174 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 RPS3AP1-201ENST00000413190 320 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 MTND2P23-201ENST00000422990 651 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 FABP5P4-201ENST00000437203 171 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 210.8 ms