Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 MTND4LP30-201ENST00000454092 297 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 AC011195.1-201ENST00000578177 177 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.63□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.24-201ENST00000362508 103 ntBASIC0.62□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.152-201ENST00000363578 100 ntBASIC0.62□□□□□ -2.31
VPS54Q9P1Q0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.62□□□□□ -2.31
VPS54Q9P1Q0 SNORD77.4-201ENST00000516158 81 ntBASIC0.62□□□□□ -2.31
VPS54Q9P1Q0 RNU6-958P-201ENST00000516995 106 ntBASIC0.62□□□□□ -2.31
VPS54Q9P1Q0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-28-201ENST00000363931 81 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.202-201ENST00000364083 110 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 RNU6-580P-201ENST00000365159 107 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 SNORD105-201ENST00000386910 85 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 RNU1-119P-201ENST00000391122 165 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 RNU6-938P-201ENST00000411285 103 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 AC244023.1-201ENST00000426884 112 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 AC015818.7-201ENST00000428754 109 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 AC087499.7-201ENST00000441958 109 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 snoU13.16-201ENST00000459350 104 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 RNU6-1143P-201ENST00000516125 104 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 RNU6-693P-201ENST00000516134 107 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 AC006006.1-201ENST00000603082 144 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 AP000753.3-201ENST00000604083 169 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 AC242498.1-201ENST00000604134 111 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.802-201ENST00000614892 130 ntBASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.61□□□□□ -2.31
VPS54Q9P1Q0 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 RNU6-369P-201ENST00000362515 102 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.269-201ENST00000364685 89 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.376-201ENST00000365638 108 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 MIR526A2-201ENST00000390198 65 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 SNORD83.1-201ENST00000411362 77 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 AC244098.3-201ENST00000424803 96 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 AC098934.3-201ENST00000430450 190 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 SERF1AP1-201ENST00000514575 187 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 RNU6-570P-201ENST00000517051 105 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 AC022709.1-201ENST00000615967 87 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 AC134878.1-201ENST00000619901 243 ntBASIC0.6□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-34-201ENST00000362441 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-12-201ENST00000362583 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-29-201ENST00000362834 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-9-201ENST00000362912 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-21-201ENST00000362963 81 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-14-201ENST00000363090 81 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-13-201ENST00000363358 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-41-201ENST00000363608 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-11-201ENST00000363616 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-5-201ENST00000363633 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-39-201ENST00000363694 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-4-201ENST00000363810 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-16-201ENST00000363887 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-6-201ENST00000363942 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-42-201ENST00000364273 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-15-201ENST00000364809 81 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-1-201ENST00000364961 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-26-201ENST00000365067 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-10-201ENST00000365073 81 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 RNU6-934P-201ENST00000365154 107 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-43-201ENST00000365503 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-36-201ENST00000365629 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 RNU6-211P-201ENST00000384047 107 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORA24-201ENST00000384096 131 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD61-201ENST00000384252 73 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 MT-TN-201ENST00000387400 73 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.604-201ENST00000410574 102 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 AL157398.1-201ENST00000452981 186 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 RNA5SP436-201ENST00000516020 115 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 Y_RNA.673-201ENST00000516306 88 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 RNU6-1338P-201ENST00000516328 91 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORA18.4-201ENST00000516440 124 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 AC100767.1-201ENST00000528178 123 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 AL356055.1-201ENST00000602528 446 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 SNORD115-40-201ENST00000606510 82 ntBASIC0.59□□□□□ -2.31
VPS54Q9P1Q0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.59□□□□□ -2.32
VPS54Q9P1Q0 UBE2WP1-201ENST00000362030 340 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.37-201ENST00000362606 108 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 RNU6-797P-201ENST00000363101 109 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.117-201ENST00000363294 101 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 RNU1-133P-201ENST00000364867 167 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.355-201ENST00000365462 98 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 RNU6-1289P-201ENST00000384431 106 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 MIR518F-201ENST00000384973 87 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 RNU6-913P-201ENST00000390913 95 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 RNU6-1203P-201ENST00000410703 110 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 RNA5SP222-201ENST00000411039 105 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 AL731563.1-201ENST00000442202 214 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 MIR4662B-201ENST00000579498 81 ntBASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.58□□□□□ -2.32
VPS54Q9P1Q0 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 MIR377-201ENST00000362145 69 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 RNA5SP347-201ENST00000362445 119 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.229-201ENST00000364347 113 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.354-201ENST00000365448 111 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.508-201ENST00000384502 114 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 SNORA40.5-201ENST00000391061 128 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 RNU6-985P-201ENST00000410182 104 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 AC087499.4-201ENST00000448505 178 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms