Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 Y_RNA.28-201ENST00000362554 111 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 RNU6-1272P-201ENST00000362776 107 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.214-201ENST00000364201 112 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 RNU4-10P-201ENST00000364383 140 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 RNU6-580P-201ENST00000365159 107 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 RNU6-144P-201ENST00000383951 107 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 RNU6-662P-201ENST00000384253 104 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 RNU6-101P-201ENST00000410323 104 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 BTF3P11-201ENST00000426582 477 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 AC244023.1-201ENST00000426884 112 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 RNU6-1007P-201ENST00000516586 107 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 MIR5692C2-201ENST00000577959 77 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 AC242498.1-201ENST00000604134 111 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 uc_338.6-201ENST00000613544 171 ntBASIC0.38□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.16-201ENST00000362421 102 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.138-201ENST00000363462 102 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.216-201ENST00000364205 93 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 RNU6-290P-201ENST00000365212 101 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 SNORA22B-201ENST00000383876 138 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.431-201ENST00000384086 102 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.486-201ENST00000384398 107 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 RNU6-177P-201ENST00000411257 104 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 RNU6-938P-201ENST00000411285 103 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 AL358176.2-201ENST00000425769 204 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 AC091959.1-201ENST00000495857 238 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 AL008718.3-201ENST00000610217 321 ntBASIC0.37□□□□□ -2.35
KLHL28Q9NXS3 MIR377-201ENST00000362145 69 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 RNU6-770P-201ENST00000363929 105 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.241-201ENST00000364470 117 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.293-201ENST00000364908 93 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 RNU6-1138P-201ENST00000365359 106 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 SNORA24-201ENST00000384096 131 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.572-201ENST00000384757 98 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 MT-TN-201ENST00000387400 73 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 AC022028.1-201ENST00000412054 408 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.631-201ENST00000459607 101 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 SNORA68.3-201ENST00000515906 83 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 SCARNA8-201ENST00000515924 131 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 RNU2-31P-201ENST00000516954 155 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 RNU6-958P-201ENST00000516995 106 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 AL160413.1-201ENST00000622780 310 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 snoU18.1-201ENST00000629629 71 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 MIR924-201ENST00000638017 53 ntBASIC0.36□□□□□ -2.35
KLHL28Q9NXS3 MIR367-201ENST00000362299 68 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.14-201ENST00000362415 103 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.19-201ENST00000362462 99 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.64-201ENST00000362845 102 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.210-201ENST00000364161 110 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.217-201ENST00000364214 105 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 RNU6-934P-201ENST00000365154 107 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.527-201ENST00000384573 102 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MIR548A2-201ENST00000384956 97 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MIR518F-201ENST00000384973 87 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MIR140-201ENST00000385282 100 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 RNU6-913P-201ENST00000390913 95 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 RNA5SP496-201ENST00000391240 109 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MTCO2P12-201ENST00000427426 682 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 AC023449.1-201ENST00000454464 154 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MTND5P22-201ENST00000458380 195 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 RNU7-67P-201ENST00000459003 62 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 snoU13.16-201ENST00000459350 104 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.641-201ENST00000459414 105 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MTCO2P24-201ENST00000515611 426 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 SNORD77.4-201ENST00000516158 81 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 RNY3P15-201ENST00000516297 97 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 SNORA18.4-201ENST00000516440 124 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 SNORA40.15-201ENST00000516884 107 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 RNU6-988P-201ENST00000519081 107 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 AC131281.1-201ENST00000522984 164 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MIR4771-2-201ENST00000577758 74 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MIR4724-201ENST00000579485 89 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 MIR4771-1-201ENST00000582617 74 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 AP000753.3-201ENST00000604083 169 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 AC020891.4-201ENST00000605745 93 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 AC134878.1-201ENST00000619901 243 ntBASIC0.35□□□□□ -2.35
KLHL28Q9NXS3 SNORA25.1-201ENST00000362326 128 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-34-201ENST00000362441 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-12-201ENST00000362583 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-29-201ENST00000362834 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-9-201ENST00000362912 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-21-201ENST00000362963 81 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-14-201ENST00000363090 81 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-13-201ENST00000363358 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-41-201ENST00000363608 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-11-201ENST00000363616 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-5-201ENST00000363633 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-39-201ENST00000363694 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-4-201ENST00000363810 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-16-201ENST00000363887 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-28-201ENST00000363931 81 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-6-201ENST00000363942 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 SNORD115-42-201ENST00000364273 82 ntBASIC0.34□□□□□ -2.36
KLHL28Q9NXS3 Y_RNA.242-201ENST00000364473 110 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 244.7 ms