Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MIR6835-201ENST00000621552 64 ntBASIC0.67□□□□□ -2.3
DDX28Q9NUL7 snoU18.1-201ENST00000629629 71 ntBASIC0.67□□□□□ -2.3
DDX28Q9NUL7 AC068700.1-201ENST00000565862 3754 ntBASIC0.67□□□□□ -2.3
DDX28Q9NUL7 UBE2WP1-201ENST00000362030 340 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.64-201ENST00000362845 102 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.376-201ENST00000365638 108 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 MIR1827-201ENST00000408549 66 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 SNORD99-201ENST00000408612 74 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 RNA5SP95-201ENST00000410319 137 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 RPS26P5-201ENST00000418544 335 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 AC087499.4-201ENST00000448505 178 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 snoU13.16-201ENST00000459350 104 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 SNORD77.4-201ENST00000516158 81 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.666-201ENST00000516187 112 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 RNU6-126P-201ENST00000516685 103 ntBASIC0.66□□□□□ -2.3
DDX28Q9NUL7 MIR377-201ENST00000362145 69 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 MIR1-1-201ENST00000362147 71 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-34-201ENST00000362441 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.26-201ENST00000362539 101 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-12-201ENST00000362583 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-29-201ENST00000362834 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-9-201ENST00000362912 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-21-201ENST00000362963 81 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-14-201ENST00000363090 81 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 RNU6-797P-201ENST00000363101 109 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-13-201ENST00000363358 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-41-201ENST00000363608 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-11-201ENST00000363616 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-5-201ENST00000363633 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-39-201ENST00000363694 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-4-201ENST00000363810 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-16-201ENST00000363887 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-6-201ENST00000363942 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.216-201ENST00000364205 93 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-42-201ENST00000364273 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-15-201ENST00000364809 81 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-1-201ENST00000364961 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-26-201ENST00000365067 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-10-201ENST00000365073 81 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 RNU6-580P-201ENST00000365159 107 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-43-201ENST00000365503 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-36-201ENST00000365629 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORA24-201ENST00000384096 131 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 AL731563.1-201ENST00000442202 214 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 MIR4714-201ENST00000580728 77 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 AP000753.3-201ENST00000604083 169 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 SNORD115-40-201ENST00000606510 82 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 AL008718.3-201ENST00000610217 321 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.802-201ENST00000614892 130 ntBASIC0.65□□□□□ -2.31
DDX28Q9NUL7 AC023934.1-201ENST00000574529 2389 ntBASIC0.64□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.84-201ENST00000363011 104 ntBASIC0.64□□□□□ -2.31
DDX28Q9NUL7 SNORD115-28-201ENST00000363931 81 ntBASIC0.64□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.486-201ENST00000384398 107 ntBASIC0.64□□□□□ -2.31
DDX28Q9NUL7 SERF1AP1-201ENST00000514575 187 ntBASIC0.64□□□□□ -2.31
DDX28Q9NUL7 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.64□□□□□ -2.31
DDX28Q9NUL7 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
DDX28Q9NUL7 MIR6513-201ENST00000621188 64 ntBASIC0.64□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.16-201ENST00000362421 102 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.153-201ENST00000363615 91 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.241-201ENST00000364470 117 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
DDX28Q9NUL7 MIR193B-201ENST00000384907 83 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.587-201ENST00000391210 103 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.63□□□□□ -2.31
DDX28Q9NUL7 RNU7-67P-201ENST00000459003 62 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 COX6CP6-201ENST00000490840 228 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 AC007751.1-201ENST00000529260 376 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 AC004817.2-201ENST00000561794 651 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 AC006006.1-201ENST00000603082 144 ntBASIC0.63□□□□□ -2.31
DDX28Q9NUL7 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.494-201ENST00000384432 111 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 SNORA8.3-201ENST00000384679 139 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 MIR508-201ENST00000384857 115 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 SNORD105-201ENST00000386910 85 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 SNORA40.5-201ENST00000391061 128 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 RNU6-985P-201ENST00000410182 104 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.604-201ENST00000410574 102 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 AC113618.1-201ENST00000416747 285 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 RNU6-1338P-201ENST00000516328 91 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 RNU6-1137P-201ENST00000517073 99 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 MIR4264-201ENST00000583520 66 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.62□□□□□ -2.31
DDX28Q9NUL7 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.62□□□□□ -2.31
DDX28Q9NUL7 SNORD24-201ENST00000383884 75 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 RNU6-211P-201ENST00000384047 107 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 RNU6-125P-201ENST00000384505 107 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 RNU1-119P-201ENST00000391122 165 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 RNU6-1203P-201ENST00000410703 110 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.61□□□□□ -2.31
DDX28Q9NUL7 RNU6-693P-201ENST00000516134 107 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 RNU6-365P-201ENST00000517113 106 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.61□□□□□ -2.31
DDX28Q9NUL7 AL356055.1-201ENST00000602528 446 ntBASIC0.61□□□□□ -2.31
DDX28Q9NUL7 Y_RNA.37-201ENST00000362606 108 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 SNORD45.3-201ENST00000363836 72 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 RNU4-10P-201ENST00000364383 140 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 SNORA33.2-201ENST00000365413 134 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 RNU6-733P-201ENST00000410759 104 ntBASIC0.6□□□□□ -2.31
DDX28Q9NUL7 MTCYBP6-201ENST00000441810 138 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms