Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 Y_RNA.715-201ENST00000517082 110 ntBASIC0.36□□□□□ -2.35
VPS35Q96QK1 MIR4795-201ENST00000584182 89 ntBASIC0.36□□□□□ -2.35
VPS35Q96QK1 AC124312.5-201ENST00000604451 268 ntBASIC0.36□□□□□ -2.35
VPS35Q96QK1 AP000942.4-201ENST00000604811 241 ntBASIC0.36□□□□□ -2.35
VPS35Q96QK1 RAC1P9-201ENST00000604990 392 ntBASIC0.36□□□□□ -2.35
VPS35Q96QK1 AL162730.1-201ENST00000605734 292 ntBASIC0.36□□□□□ -2.35
VPS35Q96QK1 AC020891.4-201ENST00000605745 93 ntBASIC0.36□□□□□ -2.35
VPS35Q96QK1 RNU4-73P-201ENST00000363164 141 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 SNORD115-28-201ENST00000363931 81 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 VTRNA1-3-201ENST00000365645 89 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 RNU6-342P-201ENST00000384521 104 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 SNORD115-46-201ENST00000390982 71 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 AC087499.4-201ENST00000448505 178 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.35□□□□□ -2.35
VPS35Q96QK1 RNU6-958P-201ENST00000516995 106 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 AC007751.1-201ENST00000529260 376 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.35□□□□□ -2.35
VPS35Q96QK1 MIR548S-201ENST00000581352 82 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 AL133255.1-201ENST00000606374 441 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 uc_338.6-201ENST00000613544 171 ntBASIC0.35□□□□□ -2.35
VPS35Q96QK1 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 RNU6-1272P-201ENST00000362776 107 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 MIR489-201ENST00000384923 84 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 RNU7-73P-201ENST00000458743 63 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 SNORD77.4-201ENST00000516158 81 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.34□□□□□ -2.36
VPS35Q96QK1 MIR4724-201ENST00000579485 89 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 MIR4662B-201ENST00000579498 81 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.34□□□□□ -2.36
VPS35Q96QK1 MIR6740-201ENST00000618268 113 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 PVT1_3.1-201ENST00000620853 95 ntBASIC0.34□□□□□ -2.36
VPS35Q96QK1 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.34□□□□□ -2.36
VPS35Q96QK1 AC010332.2-201ENST00000613083 1904 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 Y_RNA.118-201ENST00000363300 101 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 Y_RNA.395-201ENST00000383945 109 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 SNORD38B-201ENST00000384690 67 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 RNU6-913P-201ENST00000390913 95 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 Y_RNA.581-201ENST00000391017 97 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 RNU7-56P-201ENST00000458744 62 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 RNU6-897P-201ENST00000517135 105 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 MIR5692C2-201ENST00000577959 77 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS35Q96QK1 SNORD38B-202ENST00000625943 69 ntBASIC0.33□□□□□ -2.36
VPS35Q96QK1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
VPS35Q96QK1 RNU6-450P-201ENST00000364654 107 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 Y_RNA.293-201ENST00000364908 93 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 RNU6-290P-201ENST00000365212 101 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 SNORA40.5-201ENST00000391061 128 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 MIR938-201ENST00000401216 83 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS35Q96QK1 RNU7-53P-201ENST00000516705 60 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 Y_RNA.804-201ENST00000615262 101 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 AC092634.7-201ENST00000621022 103 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 Z97988.1-201ENST00000637697 135 ntBASIC0.32□□□□□ -2.36
VPS35Q96QK1 MIR369-201ENST00000362155 70 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 Y_RNA.37-201ENST00000362606 108 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 SNORA27-201ENST00000384323 126 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 Y_RNA.486-201ENST00000384398 107 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 MIR518F-201ENST00000384973 87 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 MT-TD-201ENST00000387419 68 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 Y_RNA.587-201ENST00000391210 103 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 Y_RNA.645-201ENST00000391229 102 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 RNU6-938P-201ENST00000411285 103 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 MTND4LP30-201ENST00000454092 297 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 MIR18B-201ENST00000454574 71 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 AC090971.5-201ENST00000621102 293 ntBASIC0.31□□□□□ -2.36
VPS35Q96QK1 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.31□□□□□ -2.36
VPS35Q96QK1 SNORA25.1-201ENST00000362326 128 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 Y_RNA.105-201ENST00000363182 111 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 RNU6-514P-201ENST00000384208 107 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 MIR613-201ENST00000385248 95 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 RNU6-823P-201ENST00000391042 103 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 HMGN1P33-201ENST00000432945 451 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 RPS29P24-201ENST00000486345 171 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 RNU6-693P-201ENST00000516134 107 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 RNU2-31P-201ENST00000516954 155 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 MIR4801-201ENST00000582704 82 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 MIR8055-201ENST00000610739 97 ntBASIC0.3□□□□□ -2.36
VPS35Q96QK1 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
VPS35Q96QK1 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.29□□□□□ -2.36
VPS35Q96QK1 SNORD114-23-201ENST00000363536 72 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 SNORA1.1-201ENST00000364671 133 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 SNORD24-201ENST00000383884 75 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 MIR588-201ENST00000384900 83 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 MIR548A2-201ENST00000384956 97 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 MIR216A-201ENST00000385063 110 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 RNU6-1165P-201ENST00000410119 107 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 PMCHL1-202ENST00000423102 261 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 MTCO2P24-201ENST00000515611 426 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 RNA5SP134-201ENST00000516492 96 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.29□□□□□ -2.36
VPS35Q96QK1 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.29□□□□□ -2.36
VPS35Q96QK1 AC037487.3-201ENST00000606668 112 ntBASIC0.29□□□□□ -2.36
VPS35Q96QK1 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
VPS35Q96QK1 Y_RNA.31-201ENST00000362574 102 ntBASIC0.28□□□□□ -2.36
VPS35Q96QK1 SNORD42.2-201ENST00000365570 69 ntBASIC0.28□□□□□ -2.36
VPS35Q96QK1 Y_RNA.394-201ENST00000383942 103 ntBASIC0.28□□□□□ -2.36
VPS35Q96QK1 RNU6-662P-201ENST00000384253 104 ntBASIC0.28□□□□□ -2.36
VPS35Q96QK1 RNY3P14-201ENST00000384309 102 ntBASIC0.28□□□□□ -2.36
VPS35Q96QK1 RNU6-364P-201ENST00000384387 107 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 175.6 ms