Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RAC1P9-201ENST00000604990 392 ntBASIC0.3□□□□□ -2.36
CCDC65Q8IXS2 MIR376A1-201ENST00000616574 68 ntBASIC0.3□□□□□ -2.36
CCDC65Q8IXS2 AL589743.1-201ENST00000551932 2712 ntBASIC0.3□□□□□ -2.36
CCDC65Q8IXS2 Y_RNA.122-201ENST00000363331 96 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 Y_RNA.183-201ENST00000363882 113 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 SNORD115-28-201ENST00000363931 81 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 Y_RNA.424-201ENST00000384063 103 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 Y_RNA.445-201ENST00000384168 102 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 Y_RNA.569-201ENST00000384749 103 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 RNU7-67P-201ENST00000459003 62 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 AC108740.1-201ENST00000498629 225 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 MTCO2P24-201ENST00000515611 426 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 RNU6-897P-201ENST00000517135 105 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 MIR5692C2-201ENST00000577959 77 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 AL162730.1-201ENST00000605734 292 ntBASIC0.29□□□□□ -2.36
CCDC65Q8IXS2 Y_RNA.31-201ENST00000362574 102 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 Y_RNA.37-201ENST00000362606 108 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 RNU4-45P-201ENST00000365469 141 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 MIR216A-201ENST00000385063 110 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 SNORA40.5-201ENST00000391061 128 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 SNORD100-201ENST00000408573 76 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 HMGN1P33-201ENST00000432945 451 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 AC087499.4-201ENST00000448505 178 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 MTND5P20-201ENST00000448677 143 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 AC107297.1-201ENST00000459991 176 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 MTND3P22-201ENST00000510932 243 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 RNU6-397P-201ENST00000516226 104 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 MIR4795-201ENST00000584182 89 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 AL133255.1-201ENST00000606374 441 ntBASIC0.28□□□□□ -2.36
CCDC65Q8IXS2 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.37
CCDC65Q8IXS2 AC010332.2-201ENST00000613083 1904 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 RNU4-90P-201ENST00000362773 141 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 RNU6-1272P-201ENST00000362776 107 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 RNU4-73P-201ENST00000363164 141 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 RNA5SP517-201ENST00000364724 117 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 SNORD42.2-201ENST00000365570 69 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 MIR563-201ENST00000385080 79 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 Y_RNA.581-201ENST00000391017 97 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 MIR18B-201ENST00000454574 71 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 AC090897.1-201ENST00000580909 226 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.27□□□□□ -2.37
CCDC65Q8IXS2 MIR103A1-201ENST00000362165 78 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 SNORD44.1-201ENST00000363202 61 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 SNORA63.7-201ENST00000365579 123 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 RNY3P14-201ENST00000384309 102 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 SNORD38B-201ENST00000384690 67 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 RNU6-823P-201ENST00000391042 103 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 MIR938-201ENST00000401216 83 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 RNU6-602P-201ENST00000411155 105 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 PMCHL1-202ENST00000423102 261 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 AC023449.1-201ENST00000454464 154 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 AC082651.2-201ENST00000496833 166 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 RNU2-31P-201ENST00000516954 155 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 AC124312.5-201ENST00000604451 268 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 MIR6515-201ENST00000619843 57 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 SNORD38B-202ENST00000625943 69 ntBASIC0.26□□□□□ -2.37
CCDC65Q8IXS2 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 snoU2_19.2-201ENST00000363024 80 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 Y_RNA.217-201ENST00000364214 105 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 SNORA63C-201ENST00000364578 129 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 SNORD61-201ENST00000384252 73 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 SNORA27-201ENST00000384323 126 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 MIR588-201ENST00000384900 83 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 MIR125B2-201ENST00000385128 89 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 snoU13.2-201ENST00000459201 104 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 Y_RNA.641-201ENST00000459414 105 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 SNORD36C-201ENST00000516733 66 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 Y_RNA.702-201ENST00000516843 96 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 AC092634.7-201ENST00000621022 103 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 AC090574.1-201ENST00000623186 233 ntBASIC0.25□□□□□ -2.37
CCDC65Q8IXS2 AC090625.1-201ENST00000357130 210 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 MIR369-201ENST00000362155 70 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 Y_RNA.541-201ENST00000384640 113 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 RNU6-1165P-201ENST00000410119 107 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 RNU6-1190P-201ENST00000410811 104 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 RNU7-102P-201ENST00000458948 62 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 RNU7-185P-201ENST00000459215 60 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 RNU6-693P-201ENST00000516134 107 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 MIR4724-201ENST00000579485 89 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 SNORD92-201ENST00000585078 85 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 AL008718.3-201ENST00000610217 321 ntBASIC0.24□□□□□ -2.37
CCDC65Q8IXS2 MIR30D-201ENST00000362283 70 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 Y_RNA.14-201ENST00000362415 103 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 Y_RNA.66-201ENST00000362862 102 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 RNU6-888P-201ENST00000363010 101 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 RNU4-10P-201ENST00000364383 140 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 RNU6-450P-201ENST00000364654 107 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 RNU6-290P-201ENST00000365212 101 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 RNU6-1327P-201ENST00000365302 105 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 SNORD24-201ENST00000383884 75 ntBASIC0.23□□□□□ -2.37
CCDC65Q8IXS2 RNU6-662P-201ENST00000384253 104 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 211.6 ms