Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 RNU6-818P-201ENST00000364837 108 ntBASIC1.48□□□□□ -2.17
CLCN3P51790 snoU2-30.1-201ENST00000365012 70 ntBASIC1.48□□□□□ -2.17
CLCN3P51790 AC114811.1-201ENST00000507207 168 ntBASIC1.48□□□□□ -2.17
CLCN3P51790 RNU7-12P-201ENST00000516030 62 ntBASIC1.48□□□□□ -2.17
CLCN3P51790 RNA5SP61-201ENST00000516453 100 ntBASIC1.48□□□□□ -2.17
CLCN3P51790 MIR8070-201ENST00000616510 88 ntBASIC1.48□□□□□ -2.17
CLCN3P51790 Y_RNA.242-201ENST00000364473 110 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 RNU6-392P-201ENST00000364926 101 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 Y_RNA.357-201ENST00000365487 109 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 Y_RNA.393-201ENST00000383936 102 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 RNU6-768P-201ENST00000384683 107 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 RNU6-997P-201ENST00000384725 107 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 MIR518F-201ENST00000384973 87 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 MIR653-201ENST00000385279 96 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 MIR891A-201ENST00000401237 79 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 RNA5SP247-201ENST00000411181 105 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 MLLT10P1-201ENST00000418346 262 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 HMGN2P32-201ENST00000444648 269 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 RNU7-197P-201ENST00000458836 62 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 AC090142.3-201ENST00000519012 385 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 MIR3646-201ENST00000578301 84 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 MIR3937-201ENST00000580135 106 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 DNAJC19P2-201ENST00000593340 302 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 AL365205.2-201ENST00000594586 68 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 AL513534.2-201ENST00000603836 250 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 AL121890.5-201ENST00000620848 304 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 MIR3658-201ENST00000636291 56 ntBASIC1.47□□□□□ -2.17
CLCN3P51790 Y_RNA.337-201ENST00000365312 102 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 SNORA2.2-201ENST00000365473 135 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 RNU6-442P-201ENST00000383968 104 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 SNORD61-201ENST00000384252 73 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 SNORA26-201ENST00000391286 122 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 AC006461.1-201ENST00000412637 326 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 RPL30P7-201ENST00000479312 323 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 Y_RNA.666-201ENST00000516187 112 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 RNU6-830P-201ENST00000516353 107 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 Y_RNA.703-201ENST00000516846 111 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 RNU6-365P-201ENST00000517113 106 ntBASIC1.46□□□□□ -2.18
CLCN3P51790 Y_RNA.251-201ENST00000364551 99 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 RNU6-53P-201ENST00000365367 106 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 RNU6-449P-201ENST00000383914 107 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 SNORD116-18-201ENST00000383961 92 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 Y_RNA.400-201ENST00000383963 111 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 RNU6-163P-201ENST00000384396 106 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 RNU2-70P-201ENST00000410718 179 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 RPS27P16-201ENST00000425758 201 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.45□□□□□ -2.18
CLCN3P51790 AL392103.1-201ENST00000447000 198 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 AC090049.2-201ENST00000550377 109 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 MIR4778-201ENST00000577635 80 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 MIR3660-201ENST00000584845 100 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 Y_RNA.778-201ENST00000620203 90 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 MTND1P7-201ENST00000632801 297 ntBASIC1.45□□□□□ -2.18
CLCN3P51790 RNY1P11-201ENST00000363759 113 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 SNORD14E-201ENST00000364009 85 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 SNORA40.6-201ENST00000391153 128 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 RPS29P29-201ENST00000456396 171 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 RNU6-322P-201ENST00000516010 103 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 SNORD116-25-201ENST00000516517 92 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 RNU6-504P-201ENST00000516568 104 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 MIR3133-201ENST00000583157 78 ntBASIC1.44□□□□□ -2.18
CLCN3P51790 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
CLCN3P51790 RNU6-1084P-201ENST00000362498 107 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 RNU6-1082P-201ENST00000364574 107 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 SNORD50.2-201ENST00000365465 70 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 SNORA1-201ENST00000384107 130 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 MIR526A1-201ENST00000384897 85 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 MIR452-201ENST00000385020 85 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 MIR569-201ENST00000385228 96 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 SNORA79-201ENST00000408376 140 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 MIR548O-201ENST00000408583 114 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 RNU6-938P-201ENST00000411285 103 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 AC092991.1-201ENST00000477176 376 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.43□□□□□ -2.18
CLCN3P51790 RNU4-57P-201ENST00000515980 135 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 AC019176.1-201ENST00000518519 225 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.43□□□□□ -2.18
CLCN3P51790 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.43□□□□□ -2.18
CLCN3P51790 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
CLCN3P51790 Y_RNA.8-201ENST00000362353 102 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 Y_RNA.215-201ENST00000364204 112 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 Y_RNA.226-201ENST00000364337 114 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 RNU6-1292P-201ENST00000383856 107 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 Y_RNA.542-201ENST00000384641 111 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 Y_RNA.547-201ENST00000384654 119 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 MIR624-201ENST00000385217 97 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.42□□□□□ -2.18
CLCN3P51790 AC015922.2-201ENST00000435593 184 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 RNU6-346P-201ENST00000516288 111 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 RNU7-25P-201ENST00000516544 62 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.42□□□□□ -2.18
CLCN3P51790 AL512310.8-201ENST00000550183 120 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 AC091895.1-201ENST00000624494 256 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 MIR376A2-201ENST00000636782 80 ntBASIC1.42□□□□□ -2.18
CLCN3P51790 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
CLCN3P51790 RNU6-774P-201ENST00000363238 107 ntBASIC1.41□□□□□ -2.18
CLCN3P51790 RNU6-151P-201ENST00000364158 107 ntBASIC1.41□□□□□ -2.18
CLCN3P51790 RNU6-187P-201ENST00000384139 106 ntBASIC1.41□□□□□ -2.18
CLCN3P51790 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms