Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU6-693P-201ENST00000516134 107 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 RNU7-43P-201ENST00000516554 64 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 RNU6-635P-201ENST00000516651 102 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 RNU7-149P-201ENST00000516739 59 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 RNU6-570P-201ENST00000517051 105 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 AP003072.1-201ENST00000531740 145 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 MIR4680-201ENST00000580906 66 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 MIR4423-201ENST00000580922 80 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 AC006441.5-201ENST00000612680 209 ntBASIC0.46□□□□□ -2.34
COL5A3P25940 RNU6-268P-201ENST00000364174 107 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 Y_RNA.214-201ENST00000364201 112 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 Y_RNA.293-201ENST00000364908 93 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 SNORD114-24-201ENST00000365029 72 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 Y_RNA.418-201ENST00000384029 102 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 MIR100-201ENST00000385259 80 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 MIR1185-1-201ENST00000408598 86 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 AL392103.1-201ENST00000447000 198 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 AL157398.1-201ENST00000452981 186 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 MTND5P22-201ENST00000458380 195 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.45□□□□□ -2.34
COL5A3P25940 CYCTP-201ENST00000504253 315 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 SNORA40.15-201ENST00000516884 107 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 SNORA74.3-201ENST00000517108 154 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.45□□□□□ -2.34
COL5A3P25940 MIR4724-201ENST00000579485 89 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 uc_338.4-201ENST00000616635 176 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 SEPT14P17-201ENST00000617978 177 ntBASIC0.45□□□□□ -2.34
COL5A3P25940 Y_RNA.16-201ENST00000362421 102 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.44-201ENST00000362676 108 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU4-10P-201ENST00000364383 140 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.242-201ENST00000364473 110 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU6-969P-201ENST00000383900 105 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.422-201ENST00000384054 114 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 SNORA50A-201ENST00000384225 134 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU6-102P-201ENST00000384485 104 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 SNORA80D-201ENST00000384488 135 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU6-738P-201ENST00000384531 106 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 MIR570-201ENST00000384917 97 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.587-201ENST00000391210 103 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 MTND4LP30-201ENST00000454092 297 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.44□□□□□ -2.34
COL5A3P25940 PSMC1P5-201ENST00000512850 177 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU2-31P-201ENST00000516954 155 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU7-181P-201ENST00000517234 74 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.44□□□□□ -2.34
COL5A3P25940 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.44□□□□□ -2.34
COL5A3P25940 AC127455.1-201ENST00000565496 145 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 AL096861.1-201ENST00000610899 123 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
COL5A3P25940 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.44□□□□□ -2.34
COL5A3P25940 UBE2WP1-201ENST00000362030 340 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.153-201ENST00000363615 91 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU6-326P-201ENST00000365480 107 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU6-639P-201ENST00000384074 107 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.494-201ENST00000384432 111 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.512-201ENST00000384518 102 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 Y_RNA.537-201ENST00000384626 109 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 MIR606-201ENST00000384851 96 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 MIR452-201ENST00000385020 85 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU6-651P-201ENST00000411040 105 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 AC113618.1-201ENST00000416747 285 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 AC063976.4-201ENST00000421971 163 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 SNRPGP14-201ENST00000435400 219 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 SNORD11-201ENST00000459124 84 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 RNU7-41P-201ENST00000515917 61 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 AC008737.2-201ENST00000599446 118 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 DEFB117-201ENST00000602356 141 ntBASIC0.44□□□□□ -2.34
COL5A3P25940 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
COL5A3P25940 MIR335-201ENST00000362173 94 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 Y_RNA.203-201ENST00000364106 102 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 SNORD113.3-201ENST00000364630 78 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 Y_RNA.457-201ENST00000384237 111 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 RNU6-125P-201ENST00000384505 107 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AL603910.2-201ENST00000407268 136 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 SNORD111-201ENST00000408139 94 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AC006461.1-201ENST00000412637 326 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AC002429.1-201ENST00000437672 148 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.43□□□□□ -2.34
COL5A3P25940 SNRPGP8-201ENST00000454064 226 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 MTCO2P24-201ENST00000515611 426 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 RNU6-191P-201ENST00000516295 94 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AP003716.2-201ENST00000528260 108 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 MIR5688-201ENST00000580619 83 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AC008507.4-201ENST00000585464 127 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AL049861.1-201ENST00000603130 150 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 AC108676.2-201ENST00000605225 163 ntBASIC0.43□□□□□ -2.34
COL5A3P25940 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.43□□□□□ -2.34
COL5A3P25940 RNA5SP264-201ENST00000363115 107 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 RNU6-1205P-201ENST00000363625 106 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 RNU6-740P-201ENST00000364734 105 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 Y_RNA.326-201ENST00000365176 113 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 RNU6-396P-201ENST00000365369 105 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 RNU6-662P-201ENST00000384253 104 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 RNU6-1160P-201ENST00000384546 104 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 SNORA8.3-201ENST00000384679 139 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 SNORD89-201ENST00000390981 114 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 SNORA40.5-201ENST00000391061 128 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 AC245047.8-201ENST00000456455 284 ntBASIC0.42□□□□□ -2.34
COL5A3P25940 SNORD123-201ENST00000459473 70 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms