Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SNORD115-1-201ENST00000364961 82 ntBASIC0.62□□□□□ -2.31
SDC1P18827 SNORD115-26-201ENST00000365067 82 ntBASIC0.62□□□□□ -2.31
SDC1P18827 SNORD115-10-201ENST00000365073 81 ntBASIC0.62□□□□□ -2.31
SDC1P18827 SNORD115-43-201ENST00000365503 82 ntBASIC0.62□□□□□ -2.31
SDC1P18827 SNORD115-36-201ENST00000365629 82 ntBASIC0.62□□□□□ -2.31
SDC1P18827 Y_RNA.512-201ENST00000384518 102 ntBASIC0.62□□□□□ -2.31
SDC1P18827 SNORA8.3-201ENST00000384679 139 ntBASIC0.62□□□□□ -2.31
SDC1P18827 MT-TN-201ENST00000387400 73 ntBASIC0.62□□□□□ -2.31
SDC1P18827 RNU6-205P-201ENST00000390858 107 ntBASIC0.62□□□□□ -2.31
SDC1P18827 MIR1827-201ENST00000408549 66 ntBASIC0.62□□□□□ -2.31
SDC1P18827 MIR1276-201ENST00000408707 83 ntBASIC0.62□□□□□ -2.31
SDC1P18827 RNU6-938P-201ENST00000411285 103 ntBASIC0.62□□□□□ -2.31
SDC1P18827 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.62□□□□□ -2.31
SDC1P18827 AC090844.1-201ENST00000422019 156 ntBASIC0.62□□□□□ -2.31
SDC1P18827 MIR5688-201ENST00000580619 83 ntBASIC0.62□□□□□ -2.31
SDC1P18827 AC025627.3-201ENST00000582078 182 ntBASIC0.62□□□□□ -2.31
SDC1P18827 SNORD115-40-201ENST00000606510 82 ntBASIC0.62□□□□□ -2.31
SDC1P18827 AC104465.1-201ENST00000611365 139 ntBASIC0.62□□□□□ -2.31
SDC1P18827 MIR6504-201ENST00000613520 61 ntBASIC0.62□□□□□ -2.31
SDC1P18827 MIR6835-201ENST00000621552 64 ntBASIC0.62□□□□□ -2.31
SDC1P18827 RNU6-369P-201ENST00000362515 102 ntBASIC0.61□□□□□ -2.31
SDC1P18827 Y_RNA.237-201ENST00000364439 102 ntBASIC0.61□□□□□ -2.31
SDC1P18827 SNORD114-22-201ENST00000365423 72 ntBASIC0.61□□□□□ -2.31
SDC1P18827 RNU6-1109P-201ENST00000391187 107 ntBASIC0.61□□□□□ -2.31
SDC1P18827 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.61□□□□□ -2.31
SDC1P18827 snoU13.21-201ENST00000459368 105 ntBASIC0.61□□□□□ -2.31
SDC1P18827 TRBVB-201ENST00000477100 408 ntBASIC0.61□□□□□ -2.31
SDC1P18827 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.61□□□□□ -2.31
SDC1P18827 RNU6-693P-201ENST00000516134 107 ntBASIC0.61□□□□□ -2.31
SDC1P18827 SNORA18.4-201ENST00000516440 124 ntBASIC0.61□□□□□ -2.31
SDC1P18827 AC100767.1-201ENST00000528178 123 ntBASIC0.61□□□□□ -2.31
SDC1P18827 AP000942.4-201ENST00000604811 241 ntBASIC0.61□□□□□ -2.31
SDC1P18827 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
SDC1P18827 Y_RNA.37-201ENST00000362606 108 ntBASIC0.6□□□□□ -2.31
SDC1P18827 Y_RNA.44-201ENST00000362676 108 ntBASIC0.6□□□□□ -2.31
SDC1P18827 RNU6-740P-201ENST00000364734 105 ntBASIC0.6□□□□□ -2.31
SDC1P18827 RNU6-580P-201ENST00000365159 107 ntBASIC0.6□□□□□ -2.31
SDC1P18827 SNORD24-201ENST00000383884 75 ntBASIC0.6□□□□□ -2.31
SDC1P18827 SNORD61-201ENST00000384252 73 ntBASIC0.6□□□□□ -2.31
SDC1P18827 MIR520E-201ENST00000384867 87 ntBASIC0.6□□□□□ -2.31
SDC1P18827 MIR626-201ENST00000385032 94 ntBASIC0.6□□□□□ -2.31
SDC1P18827 RNU6-651P-201ENST00000411040 105 ntBASIC0.6□□□□□ -2.31
SDC1P18827 RNU7-67P-201ENST00000459003 62 ntBASIC0.6□□□□□ -2.31
SDC1P18827 snoU13.16-201ENST00000459350 104 ntBASIC0.6□□□□□ -2.31
SDC1P18827 AC107297.1-201ENST00000459991 176 ntBASIC0.6□□□□□ -2.31
SDC1P18827 Y_RNA.676-201ENST00000516393 96 ntBASIC0.6□□□□□ -2.31
SDC1P18827 RNU6-1270P-201ENST00000517128 108 ntBASIC0.6□□□□□ -2.31
SDC1P18827 AC004817.2-201ENST00000561794 651 ntBASIC0.6□□□□□ -2.31
SDC1P18827 MIR4452-201ENST00000583004 71 ntBASIC0.6□□□□□ -2.31
SDC1P18827 AL136317.1-201ENST00000612653 226 ntBASIC0.6□□□□□ -2.31
SDC1P18827 AC134878.1-201ENST00000619901 243 ntBASIC0.6□□□□□ -2.31
SDC1P18827 RNU6-888P-201ENST00000363010 101 ntBASIC0.59□□□□□ -2.31
SDC1P18827 Y_RNA.376-201ENST00000365638 108 ntBASIC0.59□□□□□ -2.31
SDC1P18827 MIR508-201ENST00000384857 115 ntBASIC0.59□□□□□ -2.31
SDC1P18827 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.59□□□□□ -2.31
SDC1P18827 AC087499.4-201ENST00000448505 178 ntBASIC0.59□□□□□ -2.31
SDC1P18827 SNORD2.1-201ENST00000458762 69 ntBASIC0.59□□□□□ -2.31
SDC1P18827 RPS29P1-201ENST00000465274 159 ntBASIC0.59□□□□□ -2.31
SDC1P18827 MTATP8P1-201ENST00000467115 207 ntBASIC0.59□□□□□ -2.31
SDC1P18827 SNORD36C-201ENST00000516733 66 ntBASIC0.59□□□□□ -2.31
SDC1P18827 RNU6-958P-201ENST00000516995 106 ntBASIC0.59□□□□□ -2.31
SDC1P18827 AP003484.1-201ENST00000530974 250 ntBASIC0.59□□□□□ -2.31
SDC1P18827 MIR4264-201ENST00000583520 66 ntBASIC0.59□□□□□ -2.31
SDC1P18827 AP000753.3-201ENST00000604083 169 ntBASIC0.59□□□□□ -2.31
SDC1P18827 U2.14-201ENST00000615943 113 ntBASIC0.59□□□□□ -2.31
SDC1P18827 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.58□□□□□ -2.32
SDC1P18827 MIR1-1-201ENST00000362147 71 ntBASIC0.58□□□□□ -2.32
SDC1P18827 Y_RNA.11-201ENST00000362375 109 ntBASIC0.58□□□□□ -2.32
SDC1P18827 Y_RNA.66-201ENST00000362862 102 ntBASIC0.58□□□□□ -2.32
SDC1P18827 Y_RNA.91-201ENST00000363042 107 ntBASIC0.58□□□□□ -2.32
SDC1P18827 RNU6-713P-201ENST00000384761 107 ntBASIC0.58□□□□□ -2.32
SDC1P18827 SNORD105-201ENST00000386910 85 ntBASIC0.58□□□□□ -2.32
SDC1P18827 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.58□□□□□ -2.32
SDC1P18827 RNU6-913P-201ENST00000390913 95 ntBASIC0.58□□□□□ -2.32
SDC1P18827 SNORA40.5-201ENST00000391061 128 ntBASIC0.58□□□□□ -2.32
SDC1P18827 AC244098.3-201ENST00000424803 96 ntBASIC0.58□□□□□ -2.32
SDC1P18827 AC244023.1-201ENST00000426884 112 ntBASIC0.58□□□□□ -2.32
SDC1P18827 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.58□□□□□ -2.32
SDC1P18827 COX6CP6-201ENST00000490840 228 ntBASIC0.58□□□□□ -2.32
SDC1P18827 RNU6-365P-201ENST00000517113 106 ntBASIC0.58□□□□□ -2.32
SDC1P18827 AP003072.1-201ENST00000531740 145 ntBASIC0.58□□□□□ -2.32
SDC1P18827 AC004812.1-201ENST00000540773 146 ntBASIC0.58□□□□□ -2.32
SDC1P18827 AC242498.1-201ENST00000604134 111 ntBASIC0.58□□□□□ -2.32
SDC1P18827 AL590095.2-201ENST00000604136 117 ntBASIC0.58□□□□□ -2.32
SDC1P18827 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
SDC1P18827 Y_RNA.224-201ENST00000364308 111 ntBASIC0.57□□□□□ -2.32
SDC1P18827 RNU6-484P-201ENST00000384016 107 ntBASIC0.57□□□□□ -2.32
SDC1P18827 SNORA27-201ENST00000384323 126 ntBASIC0.57□□□□□ -2.32
SDC1P18827 RNU6-110P-201ENST00000384508 104 ntBASIC0.57□□□□□ -2.32
SDC1P18827 MIR499A-201ENST00000384903 122 ntBASIC0.57□□□□□ -2.32
SDC1P18827 MT-TT-201ENST00000387460 66 ntBASIC0.57□□□□□ -2.32
SDC1P18827 SNORD83.1-201ENST00000411362 77 ntBASIC0.57□□□□□ -2.32
SDC1P18827 AC015818.7-201ENST00000428754 109 ntBASIC0.57□□□□□ -2.32
SDC1P18827 AC087499.7-201ENST00000441958 109 ntBASIC0.57□□□□□ -2.32
SDC1P18827 RNU7-73P-201ENST00000458743 63 ntBASIC0.57□□□□□ -2.32
SDC1P18827 RNU6-635P-201ENST00000516651 102 ntBASIC0.57□□□□□ -2.32
SDC1P18827 RNU6-126P-201ENST00000516685 103 ntBASIC0.57□□□□□ -2.32
SDC1P18827 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
SDC1P18827 Y_RNA.82-201ENST00000363000 102 ntBASIC0.56□□□□□ -2.32
SDC1P18827 Y_RNA.92-201ENST00000363043 102 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 150.8 ms