Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC087499.4-201ENST00000448505 178 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 MIR18B-201ENST00000454574 71 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 RNU7-73P-201ENST00000458743 63 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 AC108740.1-201ENST00000498629 225 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 SNORA25.12-201ENST00000516202 82 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 RNU6-397P-201ENST00000516226 104 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CPSF4O95639 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 Z97988.1-201ENST00000637697 135 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 AC112487.2-201ENST00000637950 304 ntBASIC0.16□□□□□ -2.38
CPSF4O95639 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
CPSF4O95639 Y_RNA.37-201ENST00000362606 108 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 SNORD44.1-201ENST00000363202 61 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 Y_RNA.263-201ENST00000364659 114 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 Y_RNA.424-201ENST00000384063 103 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 MIR518F-201ENST00000384973 87 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 MIR125B2-201ENST00000385128 89 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 RNU6-1009P-201ENST00000390996 107 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 SNORA40.5-201ENST00000391061 128 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 Y_RNA.587-201ENST00000391210 103 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 SNORD100-201ENST00000408573 76 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 RNU6-1165P-201ENST00000410119 107 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.15□□□□□ -2.39
CPSF4O95639 RNU7-102P-201ENST00000458948 62 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 RNU6-507P-201ENST00000516045 100 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 SNORD77.4-201ENST00000516158 81 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 Y_RNA.715-201ENST00000517082 110 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.15□□□□□ -2.39
CPSF4O95639 AC090897.1-201ENST00000580909 226 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.15□□□□□ -2.39
CPSF4O95639 AC122108.2-201ENST00000611946 526 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
CPSF4O95639 AL589743.1-201ENST00000551932 2712 ntBASIC0.15□□□□□ -2.39
CPSF4O95639 MIR367-201ENST00000362299 68 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU4-90P-201ENST00000362773 141 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 Y_RNA.112-201ENST00000363250 102 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-1309P-201ENST00000363305 108 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 Y_RNA.183-201ENST00000363882 113 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 Y_RNA.445-201ENST00000384168 102 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 SNORA27-201ENST00000384323 126 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-364P-201ENST00000384387 107 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 MIR518A1-201ENST00000385068 85 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 MIR518E-201ENST00000385252 88 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-1319P-201ENST00000390855 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-747P-201ENST00000390928 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 SNORD115-46-201ENST00000390982 71 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-241P-201ENST00000391148 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-447P-201ENST00000410293 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-1118P-201ENST00000410382 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-1076P-201ENST00000410397 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-355P-201ENST00000410427 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-791P-201ENST00000410467 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-705P-201ENST00000410601 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-1100P-201ENST00000410691 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU2-70P-201ENST00000410718 179 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-860P-201ENST00000410860 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-602P-201ENST00000411155 105 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-1217P-201ENST00000411276 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-785P-201ENST00000411324 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 Y_RNA.639-201ENST00000458981 102 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 snoU13.2-201ENST00000459201 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU7-185P-201ENST00000459215 60 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-693P-201ENST00000516134 107 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNA5SP94-201ENST00000516917 108 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU6-897P-201ENST00000517135 105 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 RNU7-156P-201ENST00000517214 74 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 MIR5692C2-201ENST00000577959 77 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 MIR4724-201ENST00000579485 89 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 U6.90-201ENST00000614007 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 U6.70-201ENST00000620287 104 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 uc_338.22-201ENST00000622722 187 ntBASIC0.14□□□□□ -2.39
CPSF4O95639 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.13□□□□□ -2.39
CPSF4O95639 RNU6-1272P-201ENST00000362776 107 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 MIR548A2-201ENST00000384956 97 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 MIR1257-201ENST00000408490 117 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 RNU6-1190P-201ENST00000410811 104 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 SNORA40.8-201ENST00000411034 126 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 SNRPGP12-201ENST00000449481 213 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 RPS29P24-201ENST00000486345 171 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 RNU7-53P-201ENST00000516705 60 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 SNORD36C-201ENST00000516733 66 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.13□□□□□ -2.39
CPSF4O95639 AC022523.2-201ENST00000561045 150 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 MIR4662B-201ENST00000579498 81 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 SNORA4-201ENST00000584302 138 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 AC124312.5-201ENST00000604451 268 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 RAC1P9-201ENST00000604990 392 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 SNORA25.18-201ENST00000607153 114 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 AC022709.1-201ENST00000615967 87 ntBASIC0.13□□□□□ -2.39
CPSF4O95639 Y_RNA.105-201ENST00000363182 111 ntBASIC0.12□□□□□ -2.39
CPSF4O95639 Y_RNA.122-201ENST00000363331 96 ntBASIC0.12□□□□□ -2.39
CPSF4O95639 SNORA1.1-201ENST00000364671 133 ntBASIC0.12□□□□□ -2.39
CPSF4O95639 Y_RNA.293-201ENST00000364908 93 ntBASIC0.12□□□□□ -2.39
CPSF4O95639 Y_RNA.354-201ENST00000365448 111 ntBASIC0.12□□□□□ -2.39
CPSF4O95639 SNORA63.7-201ENST00000365579 123 ntBASIC0.12□□□□□ -2.39
CPSF4O95639 SNORD24-201ENST00000383884 75 ntBASIC0.12□□□□□ -2.39
CPSF4O95639 SNORD61-201ENST00000384252 73 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms