Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL008718.3-201ENST00000610217 321 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
VPS28Q9UK41 RNU6-654P-201ENST00000364373 107 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 RNU6-396P-201ENST00000365369 105 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 Y_RNA.547-201ENST00000384654 119 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 MIR520E-201ENST00000384867 87 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 RNU6-613P-201ENST00000410412 108 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 MTCYBP6-201ENST00000441810 138 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 U7.7-201ENST00000459276 60 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 SNORD77.4-201ENST00000516158 81 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 RNU6-1137P-201ENST00000517073 99 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 MIR5688-201ENST00000580619 83 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 Y_RNA.802-201ENST00000614892 130 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.92□□□□□ -2.26
VPS28Q9UK41 AC068700.1-201ENST00000565862 3754 ntBASIC0.92□□□□□ -2.26
VPS28Q9UK41 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.91□□□□□ -2.26
VPS28Q9UK41 AC107297.1-201ENST00000459991 176 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 PSMC1P5-201ENST00000512850 177 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 RNU6-1338P-201ENST00000516328 91 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 RNU6-126P-201ENST00000516685 103 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.91□□□□□ -2.26
VPS28Q9UK41 MIR3973-201ENST00000579824 107 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 AC006006.1-201ENST00000603082 144 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 RNU6-94P-201ENST00000607728 107 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 AC243994.1-201ENST00000618627 109 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 snoU18.1-201ENST00000629629 71 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 MTND1P7-201ENST00000632801 297 ntBASIC0.91□□□□□ -2.26
VPS28Q9UK41 SNORA2B-201ENST00000384583 137 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.9□□□□□ -2.27
VPS28Q9UK41 RPS29P1-201ENST00000465274 159 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 MTCO2P24-201ENST00000515611 426 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 RNU2-13P-201ENST00000515909 113 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 RNU6-1110P-201ENST00000516462 101 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 MIR4698-201ENST00000577795 80 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 MIR548AO-201ENST00000579992 96 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 AC012433.1-201ENST00000588916 398 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 AL136317.1-201ENST00000612653 226 ntBASIC0.9□□□□□ -2.27
VPS28Q9UK41 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
VPS28Q9UK41 MIR373-201ENST00000362273 69 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 Y_RNA.11-201ENST00000362375 109 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 SNORD89-201ENST00000390981 114 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 RNU6-1203P-201ENST00000410703 110 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 AL035398.1-201ENST00000430869 322 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 MTND5P22-201ENST00000458380 195 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 Y_RNA.666-201ENST00000516187 112 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 SCARNA24.2-201ENST00000516968 130 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 AC025627.3-201ENST00000582078 182 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 AL353765.1-201ENST00000605514 183 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.89□□□□□ -2.27
VPS28Q9UK41 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
VPS28Q9UK41 RNU6-1227P-201ENST00000383981 107 ntBASIC0.88□□□□□ -2.27
VPS28Q9UK41 SNORA8.3-201ENST00000384679 139 ntBASIC0.88□□□□□ -2.27
VPS28Q9UK41 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.88□□□□□ -2.27
VPS28Q9UK41 SNORD115-34-201ENST00000362441 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-12-201ENST00000362583 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-29-201ENST00000362834 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-9-201ENST00000362912 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-21-201ENST00000362963 81 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-14-201ENST00000363090 81 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-13-201ENST00000363358 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-41-201ENST00000363608 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-11-201ENST00000363616 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-5-201ENST00000363633 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-39-201ENST00000363694 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 Y_RNA.168-201ENST00000363740 102 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-4-201ENST00000363810 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-16-201ENST00000363887 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-6-201ENST00000363942 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-42-201ENST00000364273 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 Y_RNA.275-201ENST00000364726 110 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-15-201ENST00000364809 81 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-1-201ENST00000364961 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-26-201ENST00000365067 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-10-201ENST00000365073 81 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-43-201ENST00000365503 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-36-201ENST00000365629 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 RNU6-211P-201ENST00000384047 107 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 MT-TN-201ENST00000387400 73 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 Y_RNA.587-201ENST00000391210 103 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 RNA5SP95-201ENST00000410319 137 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 AC087499.4-201ENST00000448505 178 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 RNU6-570P-201ENST00000517051 105 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.87□□□□□ -2.27
VPS28Q9UK41 FAM71BP1-201ENST00000604431 523 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 SNORD115-40-201ENST00000606510 82 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 7SK.10-201ENST00000621414 298 ntBASIC0.87□□□□□ -2.27
VPS28Q9UK41 MIR377-201ENST00000362145 69 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 SNORD115-28-201ENST00000363931 81 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 RNU4-10P-201ENST00000364383 140 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 Y_RNA.241-201ENST00000364470 117 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 RNU6-1335P-201ENST00000365426 107 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 Y_RNA.376-201ENST00000365638 108 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 RNU6-1289P-201ENST00000384431 106 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 RNU6-713P-201ENST00000384761 107 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 MIR605-201ENST00000385078 83 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 snoU13.16-201ENST00000459350 104 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 AC113410.1-201ENST00000505029 247 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 DEFB108E-201ENST00000524692 240 ntBASIC0.86□□□□□ -2.27
VPS28Q9UK41 MIR4653-201ENST00000585107 83 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms