Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 MIR4421-201ENST00000578133 69 ntBASIC1.49□□□□□ -2.17
SIX4Q9UIU6 MIR4662B-201ENST00000579498 81 ntBASIC1.49□□□□□ -2.17
SIX4Q9UIU6 MIR8074-201ENST00000615081 81 ntBASIC1.49□□□□□ -2.17
SIX4Q9UIU6 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.49□□□□□ -2.17
SIX4Q9UIU6 AC106754.2-201ENST00000623006 233 ntBASIC1.49□□□□□ -2.17
SIX4Q9UIU6 AP000648.3-201ENST00000623539 4507 ntBASIC1.49□□□□□ -2.17
SIX4Q9UIU6 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.48□□□□□ -2.17
SIX4Q9UIU6 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
SIX4Q9UIU6 RNU6-268P-201ENST00000364174 107 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 RNU6-312P-201ENST00000364629 107 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 Y_RNA.634-201ENST00000364811 113 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 Y_RNA.336-201ENST00000365307 109 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 MIR526A1-201ENST00000384897 85 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 RNU2-70P-201ENST00000410718 179 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 SNRPGP13-201ENST00000442212 177 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 RNU6-197P-201ENST00000516680 100 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 MIR4431-201ENST00000579990 94 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 AC097639.2-201ENST00000603159 172 ntBASIC1.48□□□□□ -2.17
SIX4Q9UIU6 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
SIX4Q9UIU6 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
SIX4Q9UIU6 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.47□□□□□ -2.17
SIX4Q9UIU6 Y_RNA.66-201ENST00000362862 102 ntBASIC1.47□□□□□ -2.17
SIX4Q9UIU6 RNU6-997P-201ENST00000384725 107 ntBASIC1.47□□□□□ -2.17
SIX4Q9UIU6 MIR513A1-201ENST00000385138 129 ntBASIC1.47□□□□□ -2.17
SIX4Q9UIU6 MIR516B2-201ENST00000385190 85 ntBASIC1.47□□□□□ -2.17
SIX4Q9UIU6 AC006461.1-201ENST00000412637 326 ntBASIC1.47□□□□□ -2.17
SIX4Q9UIU6 Y_RNA.180-201ENST00000363867 113 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 Y_RNA.441-201ENST00000384123 112 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 RNU6-1135P-201ENST00000411083 103 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 RNA5SP153-201ENST00000516498 76 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 RNU6-365P-201ENST00000517113 106 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 RNU6-1270P-201ENST00000517128 108 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 AC090142.3-201ENST00000519012 385 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 AC015688.6-201ENST00000577737 104 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.46□□□□□ -2.18
SIX4Q9UIU6 AC104465.1-201ENST00000611365 139 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 AC006441.5-201ENST00000612680 209 ntBASIC1.46□□□□□ -2.18
SIX4Q9UIU6 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
SIX4Q9UIU6 RNU6-199P-201ENST00000362954 107 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 RNU4-84P-201ENST00000364200 139 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 RNA5SP259-201ENST00000365541 109 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 SNORD61-201ENST00000384252 73 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 MIR548A2-201ENST00000384956 97 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 MIR452-201ENST00000385020 85 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 SNORA79-201ENST00000408376 140 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 MIR548O-201ENST00000408583 114 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 AC015922.2-201ENST00000435593 184 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 AC092991.1-201ENST00000477176 376 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 AC004223.1-201ENST00000479840 271 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 RNU6-917P-201ENST00000516294 104 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 RNU7-25P-201ENST00000516544 62 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 RNU1-92P-201ENST00000517017 135 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 AC007751.1-201ENST00000529260 376 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 AL160236.1-201ENST00000556317 195 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 snoU13.31-201ENST00000607291 104 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 AC015726.2-201ENST00000620112 122 ntBASIC1.45□□□□□ -2.18
SIX4Q9UIU6 SNORA7.1-201ENST00000363750 139 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 Y_RNA.242-201ENST00000364473 110 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 Y_RNA.272-201ENST00000364696 102 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 RNU6-804P-201ENST00000384286 107 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 MIR518F-201ENST00000384973 87 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 AC009474.2-201ENST00000451383 136 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 RNU1-123P-201ENST00000458950 160 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 AC107027.2-201ENST00000512197 115 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 RNU6-126P-201ENST00000516685 103 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 MIR4498-201ENST00000577599 66 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 MIR378D2-201ENST00000580636 98 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 MIR8063-201ENST00000621930 81 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.44□□□□□ -2.18
SIX4Q9UIU6 AL442644.1-201ENST00000454390 3105 ntBASIC1.44□□□□□ -2.18
SIX4Q9UIU6 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.43□□□□□ -2.18
SIX4Q9UIU6 RNU6-978P-201ENST00000364371 103 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 Y_RNA.357-201ENST00000365487 109 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 SNORD38C-201ENST00000384381 69 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 Y_RNA.547-201ENST00000384654 119 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 RNU6-239P-201ENST00000390990 99 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 SNORA26-201ENST00000391286 122 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 RNU1-98P-201ENST00000458992 160 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 AC005840.1-201ENST00000498412 377 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 RNU6-693P-201ENST00000516134 107 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 RNU6-504P-201ENST00000516568 104 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 AC068338.1-201ENST00000565567 176 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 MIR3660-201ENST00000584845 100 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 MIR3658-201ENST00000636291 56 ntBASIC1.43□□□□□ -2.18
SIX4Q9UIU6 MIR302D-201ENST00000362275 68 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 Y_RNA.8-201ENST00000362353 102 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 RNU6-888P-201ENST00000363010 101 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 RNU6-1130P-201ENST00000365434 107 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 SNORD24-201ENST00000383884 75 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 RNU6-1336P-201ENST00000383886 109 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 RNU6-768P-201ENST00000384683 107 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 RNU6-394P-201ENST00000410735 107 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 HSPE1P24-201ENST00000450782 238 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 snoU13.9-201ENST00000458927 103 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.42□□□□□ -2.18
SIX4Q9UIU6 MIR4422-201ENST00000581938 83 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 FAM106DP-201ENST00000586416 501 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 AL365434.2-201ENST00000607979 234 ntBASIC1.42□□□□□ -2.18
SIX4Q9UIU6 AC021753.1-201ENST00000635724 168 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms