Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 AC124312.5-201ENST00000604451 268 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 LARP7P1-201ENST00000605576 316 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 AC006441.5-201ENST00000612680 209 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 MIR376A1-201ENST00000616574 68 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 MTND1P7-201ENST00000632801 297 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 RNY1P8-201ENST00000383970 114 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.424-201ENST00000384063 103 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 SNORD115-46-201ENST00000390982 71 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 RNU6-823P-201ENST00000391042 103 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 MIR1827-201ENST00000408549 66 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 RNU6-121P-201ENST00000410525 99 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 AC005534.2-201ENST00000431047 433 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 MTCO1P5-201ENST00000433573 344 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 snoU13.21-201ENST00000459368 105 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.715-201ENST00000517082 110 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 MIR4791-201ENST00000607666 84 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 AC010487.4-201ENST00000637027 61 ntBASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.44□□□□□ -2.34
KLHL28Q9NXS3 RNU6-369P-201ENST00000362515 102 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.136-201ENST00000363444 102 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 SNORD45.3-201ENST00000363836 72 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.370-201ENST00000365589 108 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.394-201ENST00000383942 103 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.445-201ENST00000384168 102 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 SNORA51.10-201ENST00000384418 136 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.494-201ENST00000384432 111 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.537-201ENST00000384626 109 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 RNU6-1237P-201ENST00000384777 107 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 SNORD105-201ENST00000386910 85 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 RNU6-613P-201ENST00000410412 108 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.639-201ENST00000458981 102 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.637-201ENST00000459424 114 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 RNU2-13P-201ENST00000515909 113 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 RNU6-1170P-201ENST00000515974 106 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 RNU7-25P-201ENST00000516544 62 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 AC022140.2-201ENST00000623500 188 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 MTND4P29-201ENST00000503122 1372 ntBASIC0.43□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.183-201ENST00000363882 113 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 RNU6-899P-201ENST00000363947 107 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 SNORA50A-201ENST00000384225 134 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 RNU6-474P-201ENST00000384243 107 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.509-201ENST00000384506 99 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.569-201ENST00000384749 103 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 MT-TD-201ENST00000387419 68 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 AC090844.1-201ENST00000422019 156 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 MTATP6P23-201ENST00000440153 476 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 C8orf59P2-201ENST00000603441 271 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 AC090971.5-201ENST00000621102 293 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 AC090574.1-201ENST00000623186 233 ntBASIC0.42□□□□□ -2.34
KLHL28Q9NXS3 AL589743.1-201ENST00000551932 2712 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 RNU6-1205P-201ENST00000363625 106 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.168-201ENST00000363740 102 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 RNU6-396P-201ENST00000365369 105 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 RNU6-125P-201ENST00000384505 107 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.547-201ENST00000384654 119 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 MIR215-201ENST00000384858 110 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 RNU6-205P-201ENST00000390858 107 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 RNU6-1248P-201ENST00000391096 64 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 RNA5SP222-201ENST00000411039 105 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 AC015818.7-201ENST00000428754 109 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 AC087499.7-201ENST00000441958 109 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 MIR2115-201ENST00000516657 100 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 RNU7-149P-201ENST00000516739 59 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 AL049861.1-201ENST00000603130 150 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 AL021707.8-201ENST00000609428 183 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 AC243994.1-201ENST00000618627 109 ntBASIC0.41□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.26-201ENST00000362539 101 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 RNU4-90P-201ENST00000362773 141 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 snoU2_19.2-201ENST00000363024 80 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 RNU6-806P-201ENST00000365147 105 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.541-201ENST00000384640 113 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 MIR548O-201ENST00000408583 114 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 MIR1252-201ENST00000408861 65 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.666-201ENST00000516187 112 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 RN7SKP12-201ENST00000516275 143 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 AC007751.1-201ENST00000529260 376 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 AC013791.1-201ENST00000616619 62 ntBASIC0.4□□□□□ -2.35
KLHL28Q9NXS3 MIR1-1-201ENST00000362147 71 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 SNORA1.2-201ENST00000365189 134 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 SNORA63.7-201ENST00000365579 123 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.389-201ENST00000383924 113 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 SNORA36.2-201ENST00000384004 127 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 Y_RNA.581-201ENST00000391017 97 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 RNU6-847P-201ENST00000411115 108 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 SNORD83.1-201ENST00000411362 77 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 RPL21P38-201ENST00000418090 167 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 ELOCP20-201ENST00000422460 345 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 AL117351.2-201ENST00000513571 157 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 uc_338.4-201ENST00000616635 176 ntBASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.39□□□□□ -2.35
KLHL28Q9NXS3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 194.8 ms