Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 RNU6-679P-201ENST00000391003 106 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-1248P-201ENST00000391096 64 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 BTF3P11-201ENST00000426582 477 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 HSPE1P25-201ENST00000455484 251 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 RNU7-56P-201ENST00000458744 62 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 RNU7-62P-201ENST00000458856 62 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 snoU13.16-201ENST00000459350 104 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 AC107297.1-201ENST00000459991 176 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 MIR4264-201ENST00000583520 66 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 MIR4795-201ENST00000584182 89 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 AC243829.6-201ENST00000612652 106 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 AC134878.1-201ENST00000619901 243 ntBASIC0.28□□□□□ -2.36
EXOSC4Q9NPD3 RNU6-450P-201ENST00000364654 107 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.424-201ENST00000384063 103 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.486-201ENST00000384398 107 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.526-201ENST00000384572 110 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 RNU6-913P-201ENST00000390913 95 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 MIR1302-11-201ENST00000408051 138 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 MIR1302-9-201ENST00000408365 138 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 MIR1302-10-201ENST00000408734 138 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 HMGN1P33-201ENST00000432945 451 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 MTCO1P5-201ENST00000433573 344 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 RNU6-496P-201ENST00000516145 99 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 MIR1302-2-201ENST00000607096 138 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 MIR376A1-201ENST00000616574 68 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 MIR6740-201ENST00000618268 113 ntBASIC0.27□□□□□ -2.37
EXOSC4Q9NPD3 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.569-201ENST00000384749 103 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 RNU6-938P-201ENST00000411285 103 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 AC023449.1-201ENST00000454464 154 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 RNA5SP220-201ENST00000516298 104 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 RNU6-897P-201ENST00000517135 105 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 AC124312.5-201ENST00000604451 268 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 AC013791.1-201ENST00000616619 62 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 uc_338.22-201ENST00000622722 187 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 AC010332.2-201ENST00000613083 1904 ntBASIC0.26□□□□□ -2.37
EXOSC4Q9NPD3 MIR369-201ENST00000362155 70 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 MIRLET7D-201ENST00000362263 87 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.31-201ENST00000362574 102 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 RNU4-73P-201ENST00000363164 141 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.105-201ENST00000363182 111 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 RNU6-144P-201ENST00000383951 107 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 SNORA24-201ENST00000384096 131 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.645-201ENST00000391229 102 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 AC082651.2-201ENST00000496833 166 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 SNORA18.4-201ENST00000516440 124 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 C8orf59P2-201ENST00000603441 271 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 AC008608.1-201ENST00000603910 127 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 AL021707.8-201ENST00000609428 183 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 AC122108.2-201ENST00000611946 526 ntBASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.25□□□□□ -2.37
EXOSC4Q9NPD3 MIR103A1-201ENST00000362165 78 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.14-201ENST00000362415 103 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-34-201ENST00000362441 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-12-201ENST00000362583 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-29-201ENST00000362834 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-9-201ENST00000362912 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-21-201ENST00000362963 81 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-14-201ENST00000363090 81 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.112-201ENST00000363250 102 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 RNU6-1309P-201ENST00000363305 108 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-13-201ENST00000363358 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.136-201ENST00000363444 102 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-41-201ENST00000363608 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-11-201ENST00000363616 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-5-201ENST00000363633 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-39-201ENST00000363694 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-4-201ENST00000363810 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-16-201ENST00000363887 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-28-201ENST00000363931 81 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-6-201ENST00000363942 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-42-201ENST00000364273 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 RNU4-10P-201ENST00000364383 140 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.242-201ENST00000364473 110 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-15-201ENST00000364809 81 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.293-201ENST00000364908 93 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-1-201ENST00000364961 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-26-201ENST00000365067 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-10-201ENST00000365073 81 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-43-201ENST00000365503 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-36-201ENST00000365629 82 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.394-201ENST00000383942 103 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.419-201ENST00000384041 102 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD38B-201ENST00000384690 67 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 SNORD115-46-201ENST00000390982 71 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 MTND4P19-201ENST00000446659 478 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 MTND5P20-201ENST00000448677 143 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.639-201ENST00000458981 102 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 RNU6-693P-201ENST00000516134 107 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 Y_RNA.676-201ENST00000516393 96 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 RNA5SP134-201ENST00000516492 96 ntBASIC0.24□□□□□ -2.37
EXOSC4Q9NPD3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms