Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNU1-54P-201ENST00000517181 120 ntBASIC-1.03□□□□□ -2.57
CCDC42Q96M95 MIR4491-201ENST00000581087 68 ntBASIC-1.03□□□□□ -2.57
CCDC42Q96M95 AL133255.1-201ENST00000606374 441 ntBASIC-1.03□□□□□ -2.57
CCDC42Q96M95 AP001282.2-201ENST00000616149 309 ntBASIC-1.03□□□□□ -2.57
CCDC42Q96M95 AL662814.1-201ENST00000617364 121 ntBASIC-1.03□□□□□ -2.57
CCDC42Q96M95 AL596211.1-201ENST00000569873 2277 ntBASIC-1.03□□□□□ -2.57
CCDC42Q96M95 RNU6-1085P-201ENST00000363576 107 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 SEPT14P3-201ENST00000439401 183 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 MTND2P22-201ENST00000444325 1033 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 AL732372.2-207ENST00000445840 183 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 SEPT14P2-201ENST00000453405 183 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 RPS29P24-201ENST00000486345 171 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 SEPT14P4-201ENST00000513445 186 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 FO082796.1-201ENST00000523795 183 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 MIR4493-201ENST00000584016 73 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 uc_338.28-201ENST00000612082 187 ntBASIC-1.04□□□□□ -2.58
CCDC42Q96M95 RNU6-674P-201ENST00000363831 107 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 Y_RNA.329-201ENST00000365209 107 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 Y_RNA.466-201ENST00000384294 113 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 SNORA27-201ENST00000384323 126 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 RNU6-480P-201ENST00000384332 107 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 Y_RNA.477-201ENST00000384352 108 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 SNORD75.1-201ENST00000408373 60 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 MIR5589-201ENST00000579442 60 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 DISC2.1-201ENST00000612827 205 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 MIR548AY-201ENST00000617669 107 ntBASIC-1.05□□□□□ -2.58
CCDC42Q96M95 MIR655-201ENST00000362159 97 ntBASIC-1.06□□□□□ -2.58
CCDC42Q96M95 RNU4-50P-201ENST00000364361 141 ntBASIC-1.06□□□□□ -2.58
CCDC42Q96M95 MIR1278-201ENST00000408753 81 ntBASIC-1.06□□□□□ -2.58
CCDC42Q96M95 RNU6-1190P-201ENST00000410811 104 ntBASIC-1.06□□□□□ -2.58
CCDC42Q96M95 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-1.06□□□□□ -2.58
CCDC42Q96M95 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-1.06□□□□□ -2.58
CCDC42Q96M95 SNORD115-28-201ENST00000363931 81 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 RNU4-84P-201ENST00000364200 139 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 SNORA72.6-201ENST00000384520 129 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 Y_RNA.582-201ENST00000391023 95 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 RNA5SP237-201ENST00000410414 113 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 AC244250.2-201ENST00000418731 148 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 RPL30P15-201ENST00000457129 321 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 RNU6-1265P-201ENST00000516342 103 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-1.07□□□□□ -2.58
CCDC42Q96M95 MIR4432-201ENST00000581823 84 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 AL080274.1-201ENST00000605565 220 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 RN7SL660P-201ENST00000614852 299 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 AC073869.9-201ENST00000641610 120 ntBASIC-1.07□□□□□ -2.58
CCDC42Q96M95 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-1.07□□□□□ -2.58
CCDC42Q96M95 SNORD115-24-201ENST00000363528 82 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 SNORD114-11-201ENST00000363738 75 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 Y_RNA.170-201ENST00000363746 110 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 MIR548I3-201ENST00000408378 149 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 MIR1912-201ENST00000410389 80 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 RNU6-938P-201ENST00000411285 103 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 AC096949.1-201ENST00000412047 152 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 MTND3P7-201ENST00000474435 343 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 RNU6-470P-201ENST00000515954 104 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 MIR3942-201ENST00000585264 109 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 AC024933.1-201ENST00000608472 348 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 AL590491.3-201ENST00000610731 82 ntBASIC-1.08□□□□□ -2.58
CCDC42Q96M95 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.08□□□□□ -2.58
CCDC42Q96M95 SNORD116-9-201ENST00000384000 95 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 SNORD116-3-201ENST00000384287 95 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 SNORD116-8-201ENST00000384365 95 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 SNORD116-7-201ENST00000384404 95 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 SNORD116-5-201ENST00000384462 95 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 SNORD77.3-201ENST00000391113 65 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 MIR548L-201ENST00000408303 86 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 AF228730.4-201ENST00000421457 183 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 FCF1P4-201ENST00000448326 183 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 Y_RNA.693-201ENST00000516641 110 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 NAMPTP3-201ENST00000569273 224 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 AL050303.3-201ENST00000613704 284 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 MIR6128-201ENST00000615528 109 ntBASIC-1.09□□□□□ -2.58
CCDC42Q96M95 MIR101-2-201ENST00000362195 79 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 Y_RNA.72-201ENST00000362894 103 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 RNA5SP98-201ENST00000363158 137 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 RNU6-926P-201ENST00000384075 107 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 RNU6-20P-201ENST00000384106 107 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 SNORA1-201ENST00000384107 130 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 AL590004.1-201ENST00000405321 300 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 MTATP6P26-201ENST00000445926 662 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-1.1□□□□□ -2.59
CCDC42Q96M95 AC007751.1-201ENST00000529260 376 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 AC005014.3-201ENST00000605985 190 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 AC084368.1-201ENST00000620935 65 ntBASIC-1.1□□□□□ -2.59
CCDC42Q96M95 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.11□□□□□ -2.59
CCDC42Q96M95 SNORA25.7-201ENST00000364375 127 ntBASIC-1.11□□□□□ -2.59
CCDC42Q96M95 Y_RNA.251-201ENST00000364551 99 ntBASIC-1.11□□□□□ -2.59
CCDC42Q96M95 MIRLET7F2-201ENST00000385277 83 ntBASIC-1.11□□□□□ -2.59
CCDC42Q96M95 AC098826.2-201ENST00000452011 651 ntBASIC-1.11□□□□□ -2.59
CCDC42Q96M95 AC022441.3-201ENST00000605737 136 ntBASIC-1.11□□□□□ -2.59
CCDC42Q96M95 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC-1.11□□□□□ -2.59
CCDC42Q96M95 MIR6507-201ENST00000613630 70 ntBASIC-1.11□□□□□ -2.59
CCDC42Q96M95 Y_RNA.49-201ENST00000362714 112 ntBASIC-1.12□□□□□ -2.59
CCDC42Q96M95 RNU6-626P-201ENST00000363354 107 ntBASIC-1.12□□□□□ -2.59
CCDC42Q96M95 RNA5SP245-201ENST00000364239 121 ntBASIC-1.12□□□□□ -2.59
CCDC42Q96M95 RNA5SP205-201ENST00000364653 136 ntBASIC-1.12□□□□□ -2.59
CCDC42Q96M95 RNU6-1184P-201ENST00000384588 108 ntBASIC-1.12□□□□□ -2.59
CCDC42Q96M95 AC074085.1-201ENST00000413598 418 ntBASIC-1.12□□□□□ -2.59
CCDC42Q96M95 AC108059.2-201ENST00000434626 151 ntBASIC-1.12□□□□□ -2.59
CCDC42Q96M95 AC022960.3-201ENST00000619794 441 ntBASIC-1.12□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms