Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MIR5692C2-201ENST00000577959 77 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.64-201ENST00000362845 102 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.380-201ENST00000365663 111 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.527-201ENST00000384573 102 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 MIR518F-201ENST00000384973 87 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 RNU1-119P-201ENST00000391122 165 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 SNORD83.1-201ENST00000411362 77 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 MTCO2P12-201ENST00000427426 682 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 AL157398.1-201ENST00000452981 186 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.631-201ENST00000459607 101 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 MTCO2P24-201ENST00000515611 426 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 SNORD77.4-201ENST00000516158 81 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 RNU4-54P-201ENST00000516428 129 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 RNA5SP121-201ENST00000516537 101 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 MIR2115-201ENST00000516657 100 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 AC020661.2-201ENST00000560114 134 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 CYP3A137P-201ENST00000562436 69 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 AC011195.1-201ENST00000578177 177 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 AC113195.1-201ENST00000579952 141 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 RMST_2.1-201ENST00000617263 136 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 snoU18.1-201ENST00000629629 71 ntBASIC0.48□□□□□ -2.33
CCDC54Q8NEL0 MIR377-201ENST00000362145 69 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 RNU6-770P-201ENST00000363929 105 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 RNU6-1138P-201ENST00000365359 106 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 RNU6-396P-201ENST00000365369 105 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.389-201ENST00000383924 113 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 SNORD105-201ENST00000386910 85 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 RNU6-101P-201ENST00000410323 104 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 SNORA18.4-201ENST00000516440 124 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 AC004812.1-201ENST00000540773 146 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 MIR4680-201ENST00000580906 66 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 AC025627.3-201ENST00000582078 182 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 AC020891.4-201ENST00000605745 93 ntBASIC0.47□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.19-201ENST00000362462 99 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 RNU6-144P-201ENST00000383951 107 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.535-201ENST00000384612 99 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 MT-TN-201ENST00000387400 73 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 RNU6-994P-201ENST00000410507 111 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 RNU6-847P-201ENST00000411115 108 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 AC005534.2-201ENST00000431047 433 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 HMGN1P33-201ENST00000432945 451 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 AC131281.1-201ENST00000522984 164 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 AL355297.3-201ENST00000604082 446 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 MIR8055-201ENST00000610739 97 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 MIR6740-201ENST00000618268 113 ntBASIC0.46□□□□□ -2.34
CCDC54Q8NEL0 MIR96-201ENST00000362288 78 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 RNA5SP432-201ENST00000362480 116 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.210-201ENST00000364161 110 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 RNU6-945P-201ENST00000383947 107 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 SNORD61-201ENST00000384252 73 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 MIR802-201ENST00000390235 94 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 RNU6-1248P-201ENST00000391096 64 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 RNU6-1190P-201ENST00000410811 104 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 RNU6-651P-201ENST00000411040 105 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 MTND4LP11-201ENST00000422184 280 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 SNORD36C-201ENST00000516733 66 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 RNU2-31P-201ENST00000516954 155 ntBASIC0.45□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.61-201ENST00000362835 102 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.66-201ENST00000362862 102 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.84-201ENST00000363011 104 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 RNU6-326P-201ENST00000365480 107 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.431-201ENST00000384086 102 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 RNU6-1067P-201ENST00000384752 107 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 RNA5SP496-201ENST00000391240 109 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 RNU6-177P-201ENST00000411257 104 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 SNORA27.4-201ENST00000516650 95 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 MIR3171-201ENST00000584270 74 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 AP000942.4-201ENST00000604811 241 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 AC134503.1-201ENST00000633048 54 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 MIR376A2-201ENST00000636782 80 ntBASIC0.44□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.37-201ENST00000362606 108 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.128-201ENST00000363391 112 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.158-201ENST00000363651 101 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 SNORA1.2-201ENST00000365189 134 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.455-201ENST00000384230 98 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 MIR573-201ENST00000384964 99 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 MIR548P-201ENST00000408336 84 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 RNA5SP222-201ENST00000411039 105 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 RNY3P15-201ENST00000516297 97 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 MIR4804-201ENST00000581683 73 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 MIR3124-201ENST00000582636 67 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 MIR6504-201ENST00000613520 61 ntBASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
CCDC54Q8NEL0 UBE2WP1-201ENST00000362030 340 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 MIR1-1-201ENST00000362147 71 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-34-201ENST00000362441 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-12-201ENST00000362583 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-29-201ENST00000362834 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-9-201ENST00000362912 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-21-201ENST00000362963 81 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-14-201ENST00000363090 81 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 Y_RNA.117-201ENST00000363294 101 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-13-201ENST00000363358 82 ntBASIC0.42□□□□□ -2.34
CCDC54Q8NEL0 SNORD115-41-201ENST00000363608 82 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 145.1 ms