Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RNU6-1289P-201ENST00000384431 106 ntBASIC1.1□□□□□ -2.23
NPHP3Q7Z494 Y_RNA.574-201ENST00000384766 95 ntBASIC1.1□□□□□ -2.23
NPHP3Q7Z494 AL603910.2-201ENST00000407268 136 ntBASIC1.1□□□□□ -2.23
NPHP3Q7Z494 RNA5SP330-201ENST00000517096 96 ntBASIC1.1□□□□□ -2.23
NPHP3Q7Z494 MIR3192-201ENST00000584920 77 ntBASIC1.1□□□□□ -2.23
NPHP3Q7Z494 AC008507.4-201ENST00000585464 127 ntBASIC1.1□□□□□ -2.23
NPHP3Q7Z494 Y_RNA.178-201ENST00000363832 102 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.461-201ENST00000384263 103 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.572-201ENST00000384757 98 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 HMGN1P33-201ENST00000432945 451 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 SNRPGP14-201ENST00000435400 219 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 HMGN2P32-201ENST00000444648 269 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 SNORA31.4-201ENST00000516049 129 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 SCARNA15.1-201ENST00000516384 125 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 SNORD111.1-201ENST00000516421 86 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.09□□□□□ -2.24
NPHP3Q7Z494 AL117187.1-201ENST00000555482 181 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 AL357312.1-201ENST00000603879 298 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 MIR924-201ENST00000638017 53 ntBASIC1.09□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.275-201ENST00000364726 110 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 RNU6-740P-201ENST00000364734 105 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.396-201ENST00000383949 103 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 RNU6-442P-201ENST00000383968 104 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 RNU6-211P-201ENST00000384047 107 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 RNU6-472P-201ENST00000384299 107 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 RNU6-910P-201ENST00000390844 107 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 MIR1302-6-201ENST00000408466 90 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 RNU6-1054P-201ENST00000411293 104 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 SNORA74.3-201ENST00000517108 154 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.08□□□□□ -2.24
NPHP3Q7Z494 AL049861.1-201ENST00000603130 150 ntBASIC1.08□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.44-201ENST00000362676 108 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.47-201ENST00000362697 108 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 RNU6-268P-201ENST00000364174 107 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.258-201ENST00000364613 105 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.363-201ENST00000365529 113 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 MIR508-201ENST00000384857 115 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 MIR802-201ENST00000390235 94 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 AC245047.7-201ENST00000440265 293 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 RPL39P39-201ENST00000455840 151 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 SNORD123-201ENST00000459473 70 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 RNU7-41P-201ENST00000515917 61 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 SNORD116-28-201ENST00000516123 91 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.07□□□□□ -2.24
NPHP3Q7Z494 MIR6835-201ENST00000621552 64 ntBASIC1.07□□□□□ -2.24
NPHP3Q7Z494 MIR367-201ENST00000362299 68 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 RNU6-1309P-201ENST00000363305 108 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.176-201ENST00000363815 109 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 RNU1-124P-201ENST00000363861 145 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 MIR520C-201ENST00000385005 87 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 MTND2P23-201ENST00000422990 651 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 AL358176.2-201ENST00000425769 204 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 AC245047.8-201ENST00000456455 284 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 RNU6-327P-201ENST00000516270 127 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 MIR4724-201ENST00000579485 89 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 AC087685.1-201ENST00000587507 141 ntBASIC1.06□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.14-201ENST00000362415 103 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 SNORD28B-201ENST00000390993 75 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 RNA5SP193-201ENST00000410353 107 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.681-201ENST00000516445 113 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 RNU7-149P-201ENST00000516739 59 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 MIR4711-201ENST00000578274 70 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 MIR4764-201ENST00000580680 88 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 MIR548AR-201ENST00000582191 57 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 AL021707.8-201ENST00000609428 183 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 uc_338.4-201ENST00000616635 176 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.05□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.24-201ENST00000362508 103 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 SNORA25.3-201ENST00000363205 127 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 SNORD114-2-201ENST00000363953 78 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 SNORD38C-201ENST00000384381 69 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 RN7SKP164-201ENST00000516138 266 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.04□□□□□ -2.24
NPHP3Q7Z494 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.04□□□□□ -2.24
NPHP3Q7Z494 AC006006.1-201ENST00000603082 144 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 Y_RNA.802-201ENST00000614892 130 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 U2.14-201ENST00000615943 113 ntBASIC1.04□□□□□ -2.24
NPHP3Q7Z494 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
NPHP3Q7Z494 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
NPHP3Q7Z494 MIR335-201ENST00000362173 94 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 MIR570-201ENST00000384917 97 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 MIR568-201ENST00000385036 95 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.03□□□□□ -2.24
NPHP3Q7Z494 RPS26P48-201ENST00000491713 339 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.03□□□□□ -2.24
NPHP3Q7Z494 RNU7-181P-201ENST00000517234 74 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 MIR4643-201ENST00000577473 78 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 AC012433.1-201ENST00000588916 398 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 AL391903.3-201ENST00000612158 163 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
NPHP3Q7Z494 Pinc.1-201ENST00000616452 154 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 AL109933.3-201ENST00000619095 188 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 AC015726.2-201ENST00000620112 122 ntBASIC1.03□□□□□ -2.24
NPHP3Q7Z494 AL589743.1-201ENST00000551932 2712 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.68-201ENST00000362881 102 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.162-201ENST00000363683 102 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 MIR526A2-201ENST00000390198 65 ntBASIC1.02□□□□□ -2.25
NPHP3Q7Z494 Y_RNA.587-201ENST00000391210 103 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms