Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CR383656.4-201ENST00000546909 122 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 AC006362.1-201ENST00000567392 174 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 AC134878.1-201ENST00000619901 243 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 AC090582.1-201ENST00000636321 199 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 MIR3662-201ENST00000637030 95 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-161P-201ENST00000363051 106 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 SNORD115-47-201ENST00000391226 86 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 DLGAP5P1-201ENST00000430307 464 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 AC131281.1-201ENST00000522984 164 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 AL512360.1-201ENST00000555346 234 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 MIR4491-201ENST00000581087 68 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 MIR3666-201ENST00000607845 111 ntBASIC-0.42□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.577-201ENST00000384794 101 ntBASIC-0.43□□□□□ -2.48
CCDC88AQ3V6T2 MTCO2P27-201ENST00000420740 428 ntBASIC-0.43□□□□□ -2.48
CCDC88AQ3V6T2 AF228730.4-201ENST00000421457 183 ntBASIC-0.43□□□□□ -2.48
CCDC88AQ3V6T2 RNU7-67P-201ENST00000459003 62 ntBASIC-0.43□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-437P-201ENST00000459408 95 ntBASIC-0.43□□□□□ -2.48
CCDC88AQ3V6T2 RNU7-149P-201ENST00000516739 59 ntBASIC-0.43□□□□□ -2.48
CCDC88AQ3V6T2 AL662814.1-201ENST00000617364 121 ntBASIC-0.43□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-509P-201ENST00000363519 107 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 SNORA1.1-201ENST00000364671 133 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AL603910.2-201ENST00000407268 136 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-1165P-201ENST00000410119 107 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-735P-201ENST00000410612 107 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 MTND4P28-201ENST00000426217 387 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC087499.4-201ENST00000448505 178 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-835P-201ENST00000516974 104 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC007751.1-201ENST00000529260 376 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNU1-29P-201ENST00000606574 126 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 MIR6128-201ENST00000615528 109 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 uc_338.36-201ENST00000622331 158 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-99P-201ENST00000364721 107 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNA5SP300-201ENST00000391197 107 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-510P-201ENST00000391239 108 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC026782.1-201ENST00000512952 449 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.693-201ENST00000516641 110 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 RNA5SP47-201ENST00000517230 109 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC100767.1-201ENST00000528178 123 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC145350.1-201ENST00000567426 208 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC024933.1-201ENST00000608472 348 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 5S_rRNA.15-201ENST00000611169 127 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC010205.1-201ENST00000616668 449 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 AC024614.3-201ENST00000637860 256 ntBASIC-0.44□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.157-201ENST00000363638 102 ntBASIC-0.45□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.45□□□□□ -2.48
CCDC88AQ3V6T2 AC096531.1-201ENST00000419107 107 ntBASIC-0.45□□□□□ -2.48
CCDC88AQ3V6T2 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-0.45□□□□□ -2.48
CCDC88AQ3V6T2 AC024405.2-202ENST00000532731 184 ntBASIC-0.45□□□□□ -2.48
CCDC88AQ3V6T2 MIR548AZ-201ENST00000616567 95 ntBASIC-0.45□□□□□ -2.48
CCDC88AQ3V6T2 SNORD115-28-201ENST00000363931 81 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.329-201ENST00000365209 107 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.359-201ENST00000365498 102 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.409-201ENST00000383990 98 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-483P-201ENST00000384088 108 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 SNORA27-201ENST00000384323 126 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 MIR1278-201ENST00000408753 81 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 AC236972.2-201ENST00000434979 310 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-693P-201ENST00000516134 107 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 RNY1P9-201ENST00000532431 109 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 MIR3942-201ENST00000585264 109 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-949P-201ENST00000384040 107 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 MIR1468-201ENST00000410600 86 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 AC023449.1-201ENST00000454464 154 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 AC090617.10-201ENST00000624308 134 ntBASIC-0.46□□□□□ -2.48
CCDC88AQ3V6T2 MIR548A2-201ENST00000384956 97 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 MIR501-201ENST00000390204 84 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 SNORA75.1-201ENST00000391130 148 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 SNORD93-201ENST00000408813 74 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 RNU7-87P-201ENST00000459343 62 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 SNORD126-201ENST00000459475 77 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 AC107297.1-201ENST00000459991 176 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-408P-201ENST00000515910 100 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-126P-201ENST00000516685 103 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-765P-201ENST00000516916 99 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 MIR5701-3-201ENST00000578890 82 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 MIR5701-1-201ENST00000585138 82 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 AC006157.1-201ENST00000611750 366 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 RN7SL660P-201ENST00000614852 299 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 MIR5701-2-201ENST00000615634 82 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 AL391262.2-201ENST00000622466 494 ntBASIC-0.47□□□□□ -2.48
CCDC88AQ3V6T2 RPL21P38-201ENST00000418090 167 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 RPS29P24-201ENST00000486345 171 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-314P-201ENST00000516574 104 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 MIR7107-201ENST00000611489 80 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 AL391099.1-201ENST00000624635 187 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 AL162726.3-218ENST00000636401 95 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 RNU6-874P-201ENST00000362390 105 ntBASIC-0.48□□□□□ -2.49
CCDC88AQ3V6T2 Y_RNA.27-201ENST00000362540 103 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms