Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR8065-201ENST00000620577 100 ntBASIC1.39□□□□□ -2.19
CTCFP49711 AC010487.4-201ENST00000637027 61 ntBASIC1.39□□□□□ -2.19
CTCFP49711 MIR568-201ENST00000385036 95 ntBASIC1.38□□□□□ -2.19
CTCFP49711 AL603910.2-201ENST00000407268 136 ntBASIC1.38□□□□□ -2.19
CTCFP49711 RNU6-651P-201ENST00000411040 105 ntBASIC1.38□□□□□ -2.19
CTCFP49711 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.38□□□□□ -2.19
CTCFP49711 MTCYBP9-201ENST00000431021 303 ntBASIC1.38□□□□□ -2.19
CTCFP49711 AC015922.2-201ENST00000435593 184 ntBASIC1.38□□□□□ -2.19
CTCFP49711 SNORD2.1-201ENST00000458762 69 ntBASIC1.38□□□□□ -2.19
CTCFP49711 RNU7-40P-201ENST00000516397 64 ntBASIC1.38□□□□□ -2.19
CTCFP49711 AC068338.1-201ENST00000565567 176 ntBASIC1.38□□□□□ -2.19
CTCFP49711 MIR6086-201ENST00000638065 55 ntBASIC1.38□□□□□ -2.19
CTCFP49711 Y_RNA.293-201ENST00000364908 93 ntBASIC1.37□□□□□ -2.19
CTCFP49711 MIR136-201ENST00000385207 82 ntBASIC1.37□□□□□ -2.19
CTCFP49711 MIR526A2-201ENST00000390198 65 ntBASIC1.37□□□□□ -2.19
CTCFP49711 SNORD72-201ENST00000390994 80 ntBASIC1.37□□□□□ -2.19
CTCFP49711 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.37□□□□□ -2.19
CTCFP49711 AL357312.1-201ENST00000603879 298 ntBASIC1.37□□□□□ -2.19
CTCFP49711 AL627230.5-201ENST00000619807 58 ntBASIC1.37□□□□□ -2.19
CTCFP49711 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CTCFP49711 MIR367-201ENST00000362299 68 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.82-201ENST00000363000 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.92-201ENST00000363043 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 SNORD114-23-201ENST00000363536 72 ntBASIC1.36□□□□□ -2.19
CTCFP49711 RNU4-10P-201ENST00000364383 140 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.235-201ENST00000364412 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.294-201ENST00000364916 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.306-201ENST00000365015 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.312-201ENST00000365089 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.322-201ENST00000365151 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 RNU6-442P-201ENST00000383968 104 ntBASIC1.36□□□□□ -2.19
CTCFP49711 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.650-201ENST00000459002 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.777-201ENST00000516982 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 MIR4724-201ENST00000579485 89 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.771-201ENST00000598668 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 MIR8087-201ENST00000612745 78 ntBASIC1.36□□□□□ -2.19
CTCFP49711 Y_RNA.789-201ENST00000622480 102 ntBASIC1.36□□□□□ -2.19
CTCFP49711 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
CTCFP49711 RNA5SP327-201ENST00000362494 101 ntBASIC1.35□□□□□ -2.19
CTCFP49711 RNU6-268P-201ENST00000364174 107 ntBASIC1.35□□□□□ -2.19
CTCFP49711 RNA5SP496-201ENST00000391240 109 ntBASIC1.35□□□□□ -2.19
CTCFP49711 RPS29P29-201ENST00000456396 171 ntBASIC1.35□□□□□ -2.19
CTCFP49711 AC245047.8-201ENST00000456455 284 ntBASIC1.35□□□□□ -2.19
CTCFP49711 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.35□□□□□ -2.19
CTCFP49711 SNORD111.1-201ENST00000516421 86 ntBASIC1.35□□□□□ -2.19
CTCFP49711 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.35□□□□□ -2.19
CTCFP49711 AC012433.1-201ENST00000588916 398 ntBASIC1.35□□□□□ -2.19
CTCFP49711 AL096861.1-201ENST00000610899 123 ntBASIC1.35□□□□□ -2.19
CTCFP49711 Y_RNA.802-201ENST00000614892 130 ntBASIC1.35□□□□□ -2.19
CTCFP49711 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.35□□□□□ -2.19
CTCFP49711 Y_RNA.14-201ENST00000362415 103 ntBASIC1.34□□□□□ -2.19
CTCFP49711 RNU6-716P-201ENST00000365621 103 ntBASIC1.34□□□□□ -2.19
CTCFP49711 MIR15B-201ENST00000385045 98 ntBASIC1.34□□□□□ -2.19
CTCFP49711 RNU2-38P-201ENST00000410856 79 ntBASIC1.34□□□□□ -2.19
CTCFP49711 RNU6-1054P-201ENST00000411293 104 ntBASIC1.34□□□□□ -2.19
CTCFP49711 RNU6-947P-201ENST00000516264 106 ntBASIC1.34□□□□□ -2.19
CTCFP49711 SNORA74.3-201ENST00000517108 154 ntBASIC1.34□□□□□ -2.19
CTCFP49711 MIR4282-201ENST00000583613 67 ntBASIC1.34□□□□□ -2.19
CTCFP49711 uc_338.4-201ENST00000616635 176 ntBASIC1.34□□□□□ -2.19
CTCFP49711 Y_RNA.352-201ENST00000365439 102 ntBASIC1.33□□□□□ -2.2
CTCFP49711 MIR802-201ENST00000390235 94 ntBASIC1.33□□□□□ -2.2
CTCFP49711 AL118496.2-201ENST00000448300 230 ntBASIC1.33□□□□□ -2.2
CTCFP49711 SNORD127-201ENST00000458892 86 ntBASIC1.33□□□□□ -2.2
CTCFP49711 snoU13.25-201ENST00000458945 104 ntBASIC1.33□□□□□ -2.2
CTCFP49711 SNORD116-28-201ENST00000516123 91 ntBASIC1.33□□□□□ -2.2
CTCFP49711 RNU6-1007P-201ENST00000516586 107 ntBASIC1.33□□□□□ -2.2
CTCFP49711 AC100767.1-201ENST00000528178 123 ntBASIC1.33□□□□□ -2.2
CTCFP49711 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.33□□□□□ -2.2
CTCFP49711 MIR5688-201ENST00000580619 83 ntBASIC1.33□□□□□ -2.2
CTCFP49711 AL049861.1-201ENST00000603130 150 ntBASIC1.33□□□□□ -2.2
CTCFP49711 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
CTCFP49711 Y_RNA.288-201ENST00000364854 92 ntBASIC1.32□□□□□ -2.2
CTCFP49711 SNORD38C-201ENST00000384381 69 ntBASIC1.32□□□□□ -2.2
CTCFP49711 SNORA8.3-201ENST00000384679 139 ntBASIC1.32□□□□□ -2.2
CTCFP49711 Y_RNA.562-201ENST00000384695 113 ntBASIC1.32□□□□□ -2.2
CTCFP49711 Y_RNA.572-201ENST00000384757 98 ntBASIC1.32□□□□□ -2.2
CTCFP49711 SNORD123-201ENST00000459473 70 ntBASIC1.32□□□□□ -2.2
CTCFP49711 AC048334.1-201ENST00000477975 159 ntBASIC1.32□□□□□ -2.2
CTCFP49711 SNORA31.2-201ENST00000516019 134 ntBASIC1.32□□□□□ -2.2
CTCFP49711 Y_RNA.668-201ENST00000516233 93 ntBASIC1.32□□□□□ -2.2
CTCFP49711 RNU6-830P-201ENST00000516353 107 ntBASIC1.32□□□□□ -2.2
CTCFP49711 RNU7-149P-201ENST00000516739 59 ntBASIC1.32□□□□□ -2.2
CTCFP49711 SNORA18.7-201ENST00000516910 131 ntBASIC1.32□□□□□ -2.2
CTCFP49711 MIR4643-201ENST00000577473 78 ntBASIC1.32□□□□□ -2.2
CTCFP49711 MIR3192-201ENST00000584920 77 ntBASIC1.32□□□□□ -2.2
CTCFP49711 AC006006.1-201ENST00000603082 144 ntBASIC1.32□□□□□ -2.2
CTCFP49711 AC006441.5-201ENST00000612680 209 ntBASIC1.32□□□□□ -2.2
CTCFP49711 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
CTCFP49711 RNU6-1138P-201ENST00000365359 106 ntBASIC1.31□□□□□ -2.2
CTCFP49711 Y_RNA.556-201ENST00000384677 113 ntBASIC1.31□□□□□ -2.2
CTCFP49711 MIR626-201ENST00000385032 94 ntBASIC1.31□□□□□ -2.2
CTCFP49711 Y_RNA.590-201ENST00000410140 107 ntBASIC1.31□□□□□ -2.2
CTCFP49711 AC245047.7-201ENST00000440265 293 ntBASIC1.31□□□□□ -2.2
CTCFP49711 RPL39P39-201ENST00000455840 151 ntBASIC1.31□□□□□ -2.2
CTCFP49711 SNORD77.4-201ENST00000516158 81 ntBASIC1.31□□□□□ -2.2
CTCFP49711 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CTCFP49711 Y_RNA.24-201ENST00000362508 103 ntBASIC1.3□□□□□ -2.2
CTCFP49711 Y_RNA.242-201ENST00000364473 110 ntBASIC1.3□□□□□ -2.2
CTCFP49711 MRPL35P3-201ENST00000421557 364 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms