Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RNU6-654P-201ENST00000364373 107 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 RNU6-1335P-201ENST00000365426 107 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 Y_RNA.526-201ENST00000384572 110 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 MIR520H-201ENST00000385126 88 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 RNU2-64P-201ENST00000411315 191 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 AC098934.3-201ENST00000430450 190 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 AC023449.1-201ENST00000454464 154 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 RNU7-25P-201ENST00000516544 62 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 RNU6-897P-201ENST00000517135 105 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 AC113195.1-201ENST00000579952 141 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 MIR4300-201ENST00000581016 96 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 AC025627.3-201ENST00000582078 182 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.47□□□□□ -2.33
SCN1AP35498 Z83818.1-201ENST00000603584 150 ntBASIC0.47□□□□□ -2.33
SCN1AP35498 Y_RNA.136-201ENST00000363444 102 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 Y_RNA.152-201ENST00000363578 100 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 RNU6-450P-201ENST00000364654 107 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 RNU6-763P-201ENST00000390865 106 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 RNU6-823P-201ENST00000391042 103 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 RNA5SP95-201ENST00000410319 137 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 RNU6-994P-201ENST00000410507 111 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 snoU13.16-201ENST00000459350 104 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 RNU6-496P-201ENST00000516145 99 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 RNU6-977P-201ENST00000516411 103 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 SCARNA24.2-201ENST00000516968 130 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 AC023827.1-201ENST00000569247 97 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 AC008507.4-201ENST00000585464 127 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 AC087685.1-201ENST00000587507 141 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 uc_338.17-201ENST00000619633 179 ntBASIC0.46□□□□□ -2.34
SCN1AP35498 SNORD113-8-201ENST00000363497 74 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 RNU6-205P-201ENST00000390858 107 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 AC090844.1-201ENST00000422019 156 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 SERF1AP1-201ENST00000514575 187 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 RPS29P30-201ENST00000600975 111 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 MIR6740-201ENST00000618268 113 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 Y_RNA.7-201ENST00000362352 102 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 RNU6-867P-201ENST00000364956 107 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 Y_RNA.356-201ENST00000365475 113 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 Y_RNA.431-201ENST00000384086 102 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 SNORD105-201ENST00000386910 85 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 AL603910.2-201ENST00000407268 136 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 MIR1302-11-201ENST00000408051 138 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 MIR1302-9-201ENST00000408365 138 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 MIR1302-10-201ENST00000408734 138 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 RNU6-847P-201ENST00000411115 108 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 snoU13.2-201ENST00000459201 104 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 MIR1302-2-201ENST00000607096 138 ntBASIC0.45□□□□□ -2.34
SCN1AP35498 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.44□□□□□ -2.34
SCN1AP35498 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.44□□□□□ -2.34
SCN1AP35498 AC010655.3-201ENST00000478818 450 ntBASIC0.44□□□□□ -2.34
SCN1AP35498 RNU6-570P-201ENST00000517051 105 ntBASIC0.44□□□□□ -2.34
SCN1AP35498 MIR4804-201ENST00000581683 73 ntBASIC0.44□□□□□ -2.34
SCN1AP35498 RAC1P9-201ENST00000604990 392 ntBASIC0.44□□□□□ -2.34
SCN1AP35498 AC015726.2-201ENST00000620112 122 ntBASIC0.44□□□□□ -2.34
SCN1AP35498 Y_RNA.138-201ENST00000363462 102 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 RNU6-1209P-201ENST00000363655 107 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 RNU6-806P-201ENST00000365147 105 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 AL157398.1-201ENST00000452981 186 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 ACA64.5-201ENST00000516207 127 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 Y_RNA.804-201ENST00000615262 101 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 MIR377-201ENST00000362145 69 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 RNU6-369P-201ENST00000362515 102 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 Y_RNA.26-201ENST00000362539 101 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 RNU6-484P-201ENST00000384016 107 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 Y_RNA.494-201ENST00000384432 111 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 RNU6-1009P-201ENST00000390996 107 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 AL731563.1-201ENST00000442202 214 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 AP003733.2-201ENST00000529409 171 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 MIR3171-201ENST00000584270 74 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 AC104465.1-201ENST00000611365 139 ntBASIC0.43□□□□□ -2.34
SCN1AP35498 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.42□□□□□ -2.34
SCN1AP35498 snoU2_19.2-201ENST00000363024 80 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 RNA5SP62-201ENST00000363457 110 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 Y_RNA.210-201ENST00000364161 110 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 Y_RNA.251-201ENST00000364551 99 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC006461.1-201ENST00000412637 326 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC002429.1-201ENST00000437672 148 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 RNU2-11P-201ENST00000459191 187 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 RNU6-126P-201ENST00000516685 103 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 Y_RNA.702-201ENST00000516843 96 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.42□□□□□ -2.34
SCN1AP35498 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.42□□□□□ -2.34
SCN1AP35498 UBE2WP1-201ENST00000362030 340 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 SNORD115-28-201ENST00000363931 81 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 RNU6-268P-201ENST00000364174 107 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 RNU6-290P-201ENST00000365212 101 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 VTRNA1-3-201ENST00000365645 89 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 MIR518F-201ENST00000384973 87 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 MIR802-201ENST00000390235 94 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 MIR1827-201ENST00000408549 66 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 MTATP6P23-201ENST00000440153 476 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 MTND5P22-201ENST00000458380 195 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC098869.1-201ENST00000481627 292 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC113410.1-201ENST00000505029 247 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 RNU6-453P-201ENST00000516819 85 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 RNA5SP330-201ENST00000517096 96 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC018659.1-201ENST00000551083 169 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC012433.1-201ENST00000588916 398 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AL049861.1-201ENST00000603130 150 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 540.1 ms