Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 Y_RNA.581-201ENST00000391017 97 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 RNU6-823P-201ENST00000391042 103 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 MIR548O-201ENST00000408583 114 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 PMCHL1-202ENST00000423102 261 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 Y_RNA.637-201ENST00000459424 114 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 SCARNA8-201ENST00000515924 131 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 RNU6-897P-201ENST00000517135 105 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.49□□□□□ -2.33
SHMT2P34897 AC011195.1-201ENST00000578177 177 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 AC243994.1-201ENST00000618627 109 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 Y_RNA.376-201ENST00000365638 108 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 RNU6-144P-201ENST00000383951 107 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 SNORA24-201ENST00000384096 131 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 RNU6-125P-201ENST00000384505 107 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 Y_RNA.569-201ENST00000384749 103 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 RNU6-121P-201ENST00000410525 99 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 RNU6-383P-201ENST00000410864 94 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 RNU6-1132P-201ENST00000459214 107 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 snoU13.21-201ENST00000459368 105 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 RNU7-149P-201ENST00000516739 59 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 AC013791.1-201ENST00000616619 62 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 AC090971.5-201ENST00000621102 293 ntBASIC0.48□□□□□ -2.33
SHMT2P34897 MIR1-1-201ENST00000362147 71 ntBASIC0.47□□□□□ -2.33
SHMT2P34897 RNU6-1272P-201ENST00000362776 107 ntBASIC0.47□□□□□ -2.33
SHMT2P34897 RNU6-945P-201ENST00000383947 107 ntBASIC0.47□□□□□ -2.33
SHMT2P34897 RNU6-205P-201ENST00000390858 107 ntBASIC0.47□□□□□ -2.33
SHMT2P34897 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
SHMT2P34897 MIR4264-201ENST00000583520 66 ntBASIC0.47□□□□□ -2.33
SHMT2P34897 uc_338.4-201ENST00000616635 176 ntBASIC0.47□□□□□ -2.33
SHMT2P34897 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
SHMT2P34897 Y_RNA.118-201ENST00000363300 101 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 RNU6-290P-201ENST00000365212 101 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 RNU6-1138P-201ENST00000365359 106 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 RNY1P8-201ENST00000383970 114 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 Y_RNA.509-201ENST00000384506 99 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 MIR1252-201ENST00000408861 65 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 AC090844.1-201ENST00000422019 156 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 RNU4-54P-201ENST00000516428 129 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 RNU6-229P-201ENST00000516614 102 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 AL049861.1-201ENST00000603130 150 ntBASIC0.46□□□□□ -2.34
SHMT2P34897 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
SHMT2P34897 SNORD18A-201ENST00000363753 72 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 RNY1-201ENST00000364228 113 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 Y_RNA.431-201ENST00000384086 102 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 Y_RNA.494-201ENST00000384432 111 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 MIR598-201ENST00000384868 97 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 MIR573-201ENST00000384964 99 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 AC098934.3-201ENST00000430450 190 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 AC023449.1-201ENST00000454464 154 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.45□□□□□ -2.34
SHMT2P34897 SNORD77.4-201ENST00000516158 81 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 AC007751.1-201ENST00000529260 376 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 AP000753.3-201ENST00000604083 169 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 AC243829.3-201ENST00000622177 108 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 MIR5087-201ENST00000635826 76 ntBASIC0.45□□□□□ -2.34
SHMT2P34897 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
SHMT2P34897 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
SHMT2P34897 SNORD115-34-201ENST00000362441 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 Y_RNA.28-201ENST00000362554 111 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-12-201ENST00000362583 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-29-201ENST00000362834 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-9-201ENST00000362912 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-21-201ENST00000362963 81 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-14-201ENST00000363090 81 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-13-201ENST00000363358 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-41-201ENST00000363608 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-11-201ENST00000363616 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-5-201ENST00000363633 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-39-201ENST00000363694 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-4-201ENST00000363810 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-16-201ENST00000363887 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-6-201ENST00000363942 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-42-201ENST00000364273 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-15-201ENST00000364809 81 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-1-201ENST00000364961 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-26-201ENST00000365067 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-10-201ENST00000365073 81 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-43-201ENST00000365503 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-36-201ENST00000365629 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 RNA5SP496-201ENST00000391240 109 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 MIR936-201ENST00000401264 98 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 RNA5SP222-201ENST00000411039 105 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 RNU6-177P-201ENST00000411257 104 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD83.1-201ENST00000411362 77 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 MTATP6P23-201ENST00000440153 476 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 snoU13.16-201ENST00000459350 104 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 AC091959.1-201ENST00000495857 238 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 RNA5SP436-201ENST00000516020 115 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 Y_RNA.666-201ENST00000516187 112 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 AC018659.1-201ENST00000551083 169 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 MIR5692C2-201ENST00000577959 77 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 SNORD115-40-201ENST00000606510 82 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.44□□□□□ -2.34
SHMT2P34897 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
SHMT2P34897 MIR367-201ENST00000362299 68 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 Y_RNA.14-201ENST00000362415 103 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 snoU2_19.2-201ENST00000363024 80 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 Y_RNA.241-201ENST00000364470 117 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 RNU6-474P-201ENST00000384243 107 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms