Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 Y_RNA.277-201ENST00000364754 102 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 MIR222-201ENST00000384992 110 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 SNORA75.2-201ENST00000391138 150 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 SNORA75.3-201ENST00000391231 150 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 MIR1289-2-201ENST00000408360 111 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.666-201ENST00000516187 112 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 AC068338.1-201ENST00000565567 176 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 AL365265.1-201ENST00000621045 234 ntBASIC1.12□□□□□ -2.23
CHMP1AQ9HD42 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.76-201ENST00000362931 109 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 RNA5SP264-201ENST00000363115 107 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 snoU2_19.4-201ENST00000364329 80 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.288-201ENST00000364854 92 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.304-201ENST00000365011 112 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.547-201ENST00000384654 119 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.562-201ENST00000384695 113 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 MIR570-201ENST00000384917 97 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 OR2A41P-201ENST00000473586 105 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.668-201ENST00000516233 93 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.679-201ENST00000516416 91 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 AC011921.3-201ENST00000605540 361 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 AC008133.2-201ENST00000624540 351 ntBASIC1.11□□□□□ -2.23
CHMP1AQ9HD42 ZNF209P-201ENST00000593450 2304 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.54-201ENST00000362766 105 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.416-201ENST00000384014 113 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 SNORA80D-201ENST00000384488 135 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 MIR23A-201ENST00000385245 73 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 MT-TT-201ENST00000387460 66 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 SNORD12-201ENST00000391002 90 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 SNORA67.5-201ENST00000391036 107 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 MIR548O-201ENST00000408583 114 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 MIR1185-1-201ENST00000408598 86 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 AC002429.1-201ENST00000437672 148 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 AL118496.2-201ENST00000448300 230 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 RNU6-1132P-201ENST00000459214 107 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.638-201ENST00000459374 113 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 snoU13.15-201ENST00000459407 104 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 snoU13.26-201ENST00000459452 105 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 COX6CP14-201ENST00000469580 174 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 RPS23P4-201ENST00000487908 423 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 SCARNA8-201ENST00000515924 131 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 AC007751.1-201ENST00000529260 376 ntBASIC1.1□□□□□ -2.23
CHMP1AQ9HD42 RNU6-653P-201ENST00000363074 106 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 RNU1-124P-201ENST00000363861 145 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 RNA5SP48-201ENST00000363969 126 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 Y_RNA.556-201ENST00000384677 113 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 RNU1-123P-201ENST00000458950 160 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 RNU7-21P-201ENST00000459430 62 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 MTND1P19-201ENST00000511780 315 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 RNU7-40P-201ENST00000516397 64 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 RNU6-453P-201ENST00000516819 85 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 DNAJC19P9-201ENST00000555084 351 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 MIR4662B-201ENST00000579498 81 ntBASIC1.09□□□□□ -2.23
CHMP1AQ9HD42 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.09□□□□□ -2.24
CHMP1AQ9HD42 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 MIR103A2-201ENST00000362154 78 ntBASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 MIR19B1-201ENST00000384829 87 ntBASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 MIR1302-7-201ENST00000408841 72 ntBASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 AL591704.2-201ENST00000421658 181 ntBASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 AC063976.4-201ENST00000421971 163 ntBASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 MTND3P2-201ENST00000438452 342 ntBASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 MIR4251-201ENST00000635819 61 ntBASIC1.08□□□□□ -2.24
CHMP1AQ9HD42 AC008163.1-202ENST00000636004 2889 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.370-201ENST00000365589 108 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 RNU6-484P-201ENST00000384016 107 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 MIR548A2-201ENST00000384956 97 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 MIR616-201ENST00000385293 97 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 MIR1302-3-201ENST00000408128 138 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 MIR548H3-201ENST00000408771 118 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 AC009474.2-201ENST00000451383 136 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 RNU2-13P-201ENST00000515909 113 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 AC090821.2-201ENST00000523552 176 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 AP000942.3-201ENST00000603702 160 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 AL442067.1-201ENST00000613261 223 ntBASIC1.07□□□□□ -2.24
CHMP1AQ9HD42 SNORD61-201ENST00000384252 73 ntBASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.494-201ENST00000384432 111 ntBASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 MIR518F-201ENST00000384973 87 ntBASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 RNU6-381P-201ENST00000391259 108 ntBASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 AL392103.1-201ENST00000447000 198 ntBASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 SNRPGP8-201ENST00000454064 226 ntBASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 MIR4791-201ENST00000607666 84 ntBASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CHMP1AQ9HD42 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.292-201ENST00000364904 97 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 SNORA1.2-201ENST00000365189 134 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 SNORD24-201ENST00000383884 75 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 SNORA22-201ENST00000383907 134 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 SNORA70.7-201ENST00000384159 133 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 Y_RNA.477-201ENST00000384352 108 ntBASIC1.05□□□□□ -2.24
CHMP1AQ9HD42 SNORA22C-201ENST00000384614 134 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms