Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 Y_RNA.713-201ENST00000517013 96 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 AC005357.1-201ENST00000588399 301 ntBASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
TRIM40Q6P9F5 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.70-201ENST00000362886 110 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.112-201ENST00000363250 102 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 SNORD45.3-201ENST00000363836 72 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 RNU6-1048P-201ENST00000364054 107 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.252-201ENST00000364556 101 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.383-201ENST00000383855 97 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.390-201ENST00000383932 102 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 RNY1P8-201ENST00000383970 114 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 MIR573-201ENST00000384964 99 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 MIR216A-201ENST00000385063 110 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 RNU6-1248P-201ENST00000391096 64 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 RNU2-14P-201ENST00000411053 191 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.632-201ENST00000459189 102 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 AC010655.3-201ENST00000478818 450 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 RNU2-13P-201ENST00000515909 113 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.661-201ENST00000516003 99 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 UBE2V2P2-201ENST00000587677 504 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 AP000753.3-201ENST00000604083 169 ntBASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.38□□□□□ -2.35
TRIM40Q6P9F5 RNU4-80P-201ENST00000363200 141 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.143-201ENST00000363520 106 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 RNU6-801P-201ENST00000364087 105 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 RNU4-50P-201ENST00000364361 141 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 RNY3-201ENST00000365484 102 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 SNORA50A-201ENST00000384225 134 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.526-201ENST00000384572 110 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 MIR613-201ENST00000385248 95 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 MIR140-201ENST00000385282 100 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 POLR2KP2-201ENST00000438155 177 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 snoU13.21-201ENST00000459368 105 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 SNORD19B-201ENST00000459623 84 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 RN7SKP12-201ENST00000516275 143 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 MIR4264-201ENST00000583520 66 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 SNORD58B-201ENST00000607313 66 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 AC243994.1-201ENST00000618627 109 ntBASIC0.37□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.393-201ENST00000383936 102 ntBASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 RNU6-125P-201ENST00000384505 107 ntBASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 RNU6-205P-201ENST00000390858 107 ntBASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 SNORD113-5-201ENST00000607261 78 ntBASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 AC243829.6-201ENST00000612652 106 ntBASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 uc_338.4-201ENST00000616635 176 ntBASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.36□□□□□ -2.35
TRIM40Q6P9F5 RNU6-934P-201ENST00000365154 107 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 MIR520F-201ENST00000384824 87 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 MIR520H-201ENST00000385126 88 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 SNORA26.5-201ENST00000391215 123 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 SEPT14P8-201ENST00000508026 178 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 FGF7P4-201ENST00000509595 295 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 RNU6-976P-201ENST00000516086 111 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 AL589743.1-201ENST00000551932 2712 ntBASIC0.35□□□□□ -2.35
TRIM40Q6P9F5 Y_RNA.5-201ENST00000362334 102 ntBASIC0.34□□□□□ -2.36
TRIM40Q6P9F5 SNORD114-23-201ENST00000363536 72 ntBASIC0.34□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.286-201ENST00000364813 102 ntBASIC0.34□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.471-201ENST00000384312 102 ntBASIC0.34□□□□□ -2.36
TRIM40Q6P9F5 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.34□□□□□ -2.36
TRIM40Q6P9F5 RNU6-977P-201ENST00000516411 103 ntBASIC0.34□□□□□ -2.36
TRIM40Q6P9F5 RN7SL793P-201ENST00000583259 296 ntBASIC0.34□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.80-201ENST00000362996 102 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 RNU6-899P-201ENST00000363947 107 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 RNU4-45P-201ENST00000365469 141 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 SNORA24-201ENST00000384096 131 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.485-201ENST00000384395 102 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.547-201ENST00000384654 119 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 RNU6-130P-201ENST00000411112 103 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 SNORD83.1-201ENST00000411362 77 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 MTCO2P12-201ENST00000427426 682 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 snoU13.16-201ENST00000459350 104 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 SNORA68.3-201ENST00000515906 83 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 RNU7-25P-201ENST00000516544 62 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 MIR4771-2-201ENST00000577758 74 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 MIR4771-1-201ENST00000582617 74 ntBASIC0.33□□□□□ -2.36
TRIM40Q6P9F5 MIR18A-201ENST00000362310 71 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 SNORA72.1-201ENST00000363485 129 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.222-201ENST00000364264 102 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.813-201ENST00000364639 102 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 RNU6-1283P-201ENST00000365314 105 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 Y_RNA.540-201ENST00000384638 111 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 MIR548O-201ENST00000408583 114 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 AC244023.1-201ENST00000426884 112 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 AC236972.2-201ENST00000434979 310 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 AC023449.1-201ENST00000454464 154 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 AC107297.1-201ENST00000459991 176 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 RNU6-191P-201ENST00000516295 94 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 AC040926.1-201ENST00000530195 238 ntBASIC0.32□□□□□ -2.36
TRIM40Q6P9F5 AC242498.1-201ENST00000604134 111 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms