Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL121890.5-201ENST00000620848 304 ntBASIC1.43□□□□□ -2.18
USP41Q3LFD5 AC091895.1-201ENST00000624494 256 ntBASIC1.43□□□□□ -2.18
USP41Q3LFD5 MIR516B2-201ENST00000385190 85 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 RNA5SP496-201ENST00000391240 109 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 AL451046.2-201ENST00000403074 277 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.42□□□□□ -2.18
USP41Q3LFD5 RPS29P23-201ENST00000458635 123 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.42□□□□□ -2.18
USP41Q3LFD5 AC090049.2-201ENST00000550377 109 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 MIR3128-201ENST00000581957 66 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 AL513534.2-201ENST00000603836 250 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 BX284668.6-201ENST00000606899 438 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.42□□□□□ -2.18
USP41Q3LFD5 Y_RNA.65-201ENST00000362846 100 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 Y_RNA.76-201ENST00000362931 109 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 SNORD72-201ENST00000390994 80 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 SNORD116-28-201ENST00000516123 91 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 AL512310.8-201ENST00000550183 120 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 MIR4282-201ENST00000583613 67 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 MIR3660-201ENST00000584845 100 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 AC008507.4-201ENST00000585464 127 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 MIR6504-201ENST00000613520 61 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 AL365265.1-201ENST00000621045 234 ntBASIC1.41□□□□□ -2.18
USP41Q3LFD5 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
USP41Q3LFD5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
USP41Q3LFD5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.41□□□□□ -2.18
USP41Q3LFD5 Y_RNA.336-201ENST00000365307 109 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 RNU6-53P-201ENST00000365367 106 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 RNU6-442P-201ENST00000383968 104 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 MIR626-201ENST00000385032 94 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 MIR653-201ENST00000385279 96 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 SNORA40.6-201ENST00000391153 128 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.4□□□□□ -2.19
USP41Q3LFD5 AC004223.1-201ENST00000479840 271 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.4□□□□□ -2.19
USP41Q3LFD5 MTND1P19-201ENST00000511780 315 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 Y_RNA.680-201ENST00000516441 93 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 AL160236.1-201ENST00000556317 195 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.4□□□□□ -2.19
USP41Q3LFD5 MIR3664-201ENST00000579074 99 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 AL442067.1-201ENST00000613261 223 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 uc_338.4-201ENST00000616635 176 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 AL161722.3-201ENST00000605789 2983 ntBASIC1.4□□□□□ -2.19
USP41Q3LFD5 Y_RNA.292-201ENST00000364904 97 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 Y_RNA.304-201ENST00000365011 112 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 Y_RNA.307-201ENST00000365022 117 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 MIR136-201ENST00000385207 82 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 SNORD41-201ENST00000386967 70 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 Y_RNA.587-201ENST00000391210 103 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 AC015922.2-201ENST00000435593 184 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 RPL30P7-201ENST00000479312 323 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 RNU6-947P-201ENST00000516264 106 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 RNU7-149P-201ENST00000516739 59 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 AC090142.3-201ENST00000519012 385 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 AC100767.1-201ENST00000528178 123 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 AL021707.8-201ENST00000609428 183 ntBASIC1.39□□□□□ -2.19
USP41Q3LFD5 Y_RNA.60-201ENST00000362831 98 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 Y_RNA.229-201ENST00000364347 113 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 SNORA20.1-201ENST00000364790 130 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 Y_RNA.447-201ENST00000384184 113 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 Y_RNA.478-201ENST00000384358 107 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 MIR150-201ENST00000385048 84 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
USP41Q3LFD5 RNA5SP102-201ENST00000516865 106 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.38□□□□□ -2.19
USP41Q3LFD5 AC004817.2-201ENST00000561794 651 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 CYP3A52P-201ENST00000563326 91 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 MIR5688-201ENST00000580619 83 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 GHRLOS.1-201ENST00000610995 70 ntBASIC1.38□□□□□ -2.19
USP41Q3LFD5 Y_RNA.20-201ENST00000362479 113 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 Y_RNA.242-201ENST00000364473 110 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 Y_RNA.269-201ENST00000364685 89 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 SNORD38C-201ENST00000384381 69 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 Y_RNA.539-201ENST00000384635 107 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.37□□□□□ -2.19
USP41Q3LFD5 AC245047.8-201ENST00000456455 284 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 RN7SKP88-201ENST00000516847 250 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 7SK.8-201ENST00000612110 250 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 7SK.11-201ENST00000615477 250 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 Pinc.1-201ENST00000616452 154 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 7SK.13-201ENST00000622040 250 ntBASIC1.37□□□□□ -2.19
USP41Q3LFD5 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
USP41Q3LFD5 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
USP41Q3LFD5 RNU6-268P-201ENST00000364174 107 ntBASIC1.36□□□□□ -2.19
USP41Q3LFD5 Y_RNA.262-201ENST00000364641 102 ntBASIC1.36□□□□□ -2.19
USP41Q3LFD5 SNORA18.7-201ENST00000516910 131 ntBASIC1.36□□□□□ -2.19
USP41Q3LFD5 AC068338.1-201ENST00000565567 176 ntBASIC1.36□□□□□ -2.19
USP41Q3LFD5 Y_RNA.116-201ENST00000363292 103 ntBASIC1.35□□□□□ -2.19
USP41Q3LFD5 snoU2_19.4-201ENST00000364329 80 ntBASIC1.35□□□□□ -2.19
USP41Q3LFD5 RNU6-1023P-201ENST00000516137 106 ntBASIC1.35□□□□□ -2.19
USP41Q3LFD5 AL357312.1-201ENST00000603879 298 ntBASIC1.35□□□□□ -2.19
USP41Q3LFD5 AC015726.2-201ENST00000620112 122 ntBASIC1.35□□□□□ -2.19
USP41Q3LFD5 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
USP41Q3LFD5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.34□□□□□ -2.19
USP41Q3LFD5 RNU6-653P-201ENST00000363074 106 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 Y_RNA.224-201ENST00000364308 111 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 MIR15B-201ENST00000385045 98 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 MIR518E-201ENST00000385252 88 ntBASIC1.34□□□□□ -2.19
USP41Q3LFD5 MT-TT-201ENST00000387460 66 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms