Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNU5E-5P-201ENST00000365379 116 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 MIR876-201ENST00000401147 81 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 RPL30P16-201ENST00000419341 429 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 AL138752.1-201ENST00000452964 351 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 RNA5SP47-201ENST00000517230 109 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 AC127459.3-201ENST00000624328 466 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 RNU6-74P-201ENST00000384235 107 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 AC073415.1-201ENST00000449240 153 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 RNU6-1114P-201ENST00000516022 107 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 SNORA19.3-201ENST00000516165 130 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 MIR4775-201ENST00000581168 75 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 AC063944.3-201ENST00000609969 533 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 RNU6-157P-201ENST00000383957 107 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 RNU6-1103P-201ENST00000384150 107 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 RNU6-83P-201ENST00000384568 112 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 MIR563-201ENST00000385080 79 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 AL031667.1-201ENST00000440222 725 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 RNU6-436P-201ENST00000516171 114 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 RNU6-1220P-201ENST00000517126 108 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 SNORD12C-201ENST00000386307 89 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 RNU7-167P-201ENST00000459160 62 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 AC005972.2-201ENST00000604690 348 ntBASIC-0.62□□□□□ -2.51
CHD9Q3L8U1 RNU6-1329P-201ENST00000365664 107 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU6-767P-201ENST00000384132 107 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU6-901P-201ENST00000384593 106 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 MTND3P1-201ENST00000441336 220 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU6-118P-201ENST00000516552 102 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.135-201ENST00000363439 95 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU6-509P-201ENST00000363519 107 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 SNORA63.5-201ENST00000363548 123 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 SNORA25.7-201ENST00000364375 127 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 SNORD24-201ENST00000383884 75 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 SNORD56B-201ENST00000384713 71 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU6-329P-201ENST00000459618 107 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RPL7P42-201ENST00000481005 679 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 SNORA19.2-201ENST00000516013 114 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU7-53P-201ENST00000516705 60 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 AL590491.3-201ENST00000610731 82 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 DISC2.1-201ENST00000612827 205 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 AL158209.2-201ENST00000619266 216 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 MIR410-201ENST00000362222 80 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 MIR30D-201ENST00000362283 70 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.329-201ENST00000365209 107 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNA5SP261-201ENST00000410536 106 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.621-201ENST00000411065 96 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 SCARNA18B-201ENST00000458806 135 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 SNORD123-201ENST00000459473 70 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU6-1170P-201ENST00000515974 106 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 AL133255.1-201ENST00000606374 441 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 AC104010.1-201ENST00000616889 150 ntBASIC-0.63□□□□□ -2.51
CHD9Q3L8U1 RNU5F-7P-201ENST00000363696 115 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 RNY3P9-201ENST00000384727 106 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MTND3P9-201ENST00000429526 346 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 RNU7-149P-201ENST00000516739 59 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 RNU6-759P-201ENST00000516740 103 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MIR3179-1-201ENST00000578940 84 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MIR3179-2-201ENST00000579107 84 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MIR3179-3-201ENST00000579566 84 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MIR3179-4-201ENST00000617599 84 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AC072046.2-201ENST00000618366 268 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AL607023.1-201ENST00000620045 248 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 uc_338.10-201ENST00000621872 182 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AC023510.2-201ENST00000622162 746 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AC009161.2-201ENST00000624626 138 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.243-201ENST00000364481 109 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 SNORD116.1-201ENST00000365628 92 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 RNU6-790P-201ENST00000384479 105 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 RNU6-455P-201ENST00000384681 107 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MT-TY-201ENST00000387409 66 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 U8.15-201ENST00000390947 134 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 RNU6-550P-201ENST00000391057 101 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AL354751.2-201ENST00000415471 210 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AL500527.2-201ENST00000454105 95 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MTCO1P29-201ENST00000496868 288 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 RNU2-13P-201ENST00000515909 113 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.666-201ENST00000516187 112 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 MIR3139-201ENST00000579145 76 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AC022441.3-201ENST00000605737 136 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AC006566.1-201ENST00000608943 513 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 AC093726.3-201ENST00000637588 150 ntBASIC-0.64□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 RNU6-490P-201ENST00000362985 107 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.151-201ENST00000363566 112 ntBASIC-0.65□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.319-201ENST00000365138 92 ntBASIC-0.65□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 206.6 ms