Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-1132P-201ENST00000459214 107 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.45□□□□□ -2.18
COL28A1Q2UY09 RNU6-322P-201ENST00000516010 103 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 RNU6-917P-201ENST00000516294 104 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 AC019176.1-201ENST00000518519 225 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 RPL23AP91-201ENST00000569211 455 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 MIR4724-201ENST00000579485 89 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 AC068700.1-201ENST00000565862 3754 ntBASIC1.45□□□□□ -2.18
COL28A1Q2UY09 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.45□□□□□ -2.18
COL28A1Q2UY09 MIR367-201ENST00000362299 68 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.117-201ENST00000363294 101 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 SNORD114-27-201ENST00000363766 70 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.452-201ENST00000384202 108 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 RNU2-38P-201ENST00000410856 79 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.44□□□□□ -2.18
COL28A1Q2UY09 AC008507.4-201ENST00000585464 127 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.802-201ENST00000614892 130 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 AC106754.2-201ENST00000623006 233 ntBASIC1.44□□□□□ -2.18
COL28A1Q2UY09 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
COL28A1Q2UY09 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.193-201ENST00000363979 102 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.293-201ENST00000364908 93 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 RNU6-196P-201ENST00000384315 107 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 AL603910.2-201ENST00000407268 136 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 MIR548J-201ENST00000408833 112 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.590-201ENST00000410140 107 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 RNU1-98P-201ENST00000458992 160 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 AL512310.8-201ENST00000550183 120 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 MIR3664-201ENST00000579074 99 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 BX284668.6-201ENST00000606899 438 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 GHRLOS.1-201ENST00000610995 70 ntBASIC1.43□□□□□ -2.18
COL28A1Q2UY09 SNORD14E-201ENST00000364009 85 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.416-201ENST00000384014 113 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 RNU6-463P-201ENST00000384340 107 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.478-201ENST00000384358 107 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 SNORA8.3-201ENST00000384679 139 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 MIR526A1-201ENST00000384897 85 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 MIR15B-201ENST00000385045 98 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 SNORD58.1-201ENST00000391313 66 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 AL451046.2-201ENST00000403074 277 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 MIR1278-201ENST00000408753 81 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 MIR1298-201ENST00000408783 112 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 AL354695.1-201ENST00000427935 228 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 AC023449.1-201ENST00000454464 154 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 RNA5SP436-201ENST00000516020 115 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 RNU6-970P-201ENST00000516312 107 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 AC100767.1-201ENST00000528178 123 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 MIR4503-201ENST00000582187 83 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 AC062037.2-201ENST00000610137 73 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 7SK.10-201ENST00000621414 298 ntBASIC1.42□□□□□ -2.18
COL28A1Q2UY09 RNU6-702P-201ENST00000364982 107 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.304-201ENST00000365011 112 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.350-201ENST00000365409 98 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 RNU6-442P-201ENST00000383968 104 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 RNY1P4-201ENST00000384595 115 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 MIR626-201ENST00000385032 94 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 SNORD41-201ENST00000386967 70 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 SNRPGP14-201ENST00000435400 219 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 AL357312.1-201ENST00000603879 298 ntBASIC1.41□□□□□ -2.18
COL28A1Q2UY09 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.4□□□□□ -2.18
COL28A1Q2UY09 Y_RNA.144-201ENST00000363521 113 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
COL28A1Q2UY09 RNU6-383P-201ENST00000410864 94 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 RNU6-651P-201ENST00000411040 105 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 COX6CP14-201ENST00000469580 174 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 AC090142.3-201ENST00000519012 385 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 RN7SL793P-201ENST00000583259 296 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 MIR3149-201ENST00000584629 83 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 AC006006.1-201ENST00000603082 144 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 uc_338.4-201ENST00000616635 176 ntBASIC1.4□□□□□ -2.19
COL28A1Q2UY09 AP000648.3-201ENST00000623539 4507 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.20-201ENST00000362479 113 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 RNU6-1138P-201ENST00000365359 106 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 MIR136-201ENST00000385207 82 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 snosnR66.1-201ENST00000391095 99 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 RNU6-955P-201ENST00000410497 104 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 AC015922.2-201ENST00000435593 184 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.39□□□□□ -2.19
COL28A1Q2UY09 Y_RNA.679-201ENST00000516416 91 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 RNU6-922P-201ENST00000516753 99 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.39□□□□□ -2.19
COL28A1Q2UY09 AC004817.2-201ENST00000561794 651 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 MIR4643-201ENST00000577473 78 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 AC006441.5-201ENST00000612680 209 ntBASIC1.39□□□□□ -2.19
COL28A1Q2UY09 MIR1304-201ENST00000408243 91 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.38□□□□□ -2.19
COL28A1Q2UY09 AC023790.1-201ENST00000482174 347 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 RNU6-830P-201ENST00000516353 107 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 RNU6-126P-201ENST00000516685 103 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 MIR4662B-201ENST00000579498 81 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 AC011921.3-201ENST00000605540 361 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 AL442067.1-201ENST00000613261 223 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
COL28A1Q2UY09 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
COL28A1Q2UY09 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL28A1Q2UY09 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
COL28A1Q2UY09 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL28A1Q2UY09 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 186.7 ms