Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SNORD115-29-201ENST00000362834 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-9-201ENST00000362912 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-21-201ENST00000362963 81 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-14-201ENST00000363090 81 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-13-201ENST00000363358 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-41-201ENST00000363608 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-11-201ENST00000363616 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-5-201ENST00000363633 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-39-201ENST00000363694 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-4-201ENST00000363810 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-16-201ENST00000363887 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-6-201ENST00000363942 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-42-201ENST00000364273 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-15-201ENST00000364809 81 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-1-201ENST00000364961 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-26-201ENST00000365067 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-10-201ENST00000365073 81 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 Y_RNA.329-201ENST00000365209 107 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 Y_RNA.341-201ENST00000365341 102 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-43-201ENST00000365503 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-36-201ENST00000365629 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 Y_RNA.446-201ENST00000384178 104 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 U8.15-201ENST00000390947 134 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORA75.1-201ENST00000391130 148 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 Y_RNA.588-201ENST00000391254 102 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 MIR548O-201ENST00000408583 114 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 RNU6-284P-201ENST00000411105 106 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 AL445567.1-201ENST00000439121 144 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 RNU6-475P-201ENST00000516073 104 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 MIR4491-201ENST00000581087 68 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 MIR4263-201ENST00000584745 83 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 AP000942.4-201ENST00000604811 241 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 AC018462.2-201ENST00000605375 395 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD115-40-201ENST00000606510 82 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 AC005014.2-201ENST00000607795 599 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 U7.6-201ENST00000610841 64 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.51□□□□□ -2.49
FOXA3P55318 AP001282.2-201ENST00000616149 309 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 FTX_2.1-201ENST00000618816 94 ntBASIC-0.51□□□□□ -2.49
FOXA3P55318 SNORD114-11-201ENST00000363738 75 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 RNA5SP245-201ENST00000364239 121 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 RNU6-923P-201ENST00000364753 107 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 SNORA22B-201ENST00000383876 138 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 Y_RNA.473-201ENST00000384333 102 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 MIR548L-201ENST00000408303 86 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC-0.52□□□□□ -2.49
FOXA3P55318 MTATP6P26-201ENST00000445926 662 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 RPL30P15-201ENST00000457129 321 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 MTND3P7-201ENST00000474435 343 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 RNU7-53P-201ENST00000516705 60 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 SCARNA1-201ENST00000517138 166 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 AC131281.1-201ENST00000522984 164 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 AC138749.4-201ENST00000563970 127 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 AC060780.3-201ENST00000589464 80 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 AP003357.1-201ENST00000604497 148 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 MIR548AZ-201ENST00000616567 95 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 MIR7111-201ENST00000619751 72 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 MIR6759-201ENST00000638110 65 ntBASIC-0.52□□□□□ -2.49
FOXA3P55318 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.53□□□□□ -2.49
FOXA3P55318 RNA5SP257-201ENST00000363023 116 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 RNU6-726P-201ENST00000364680 107 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 Y_RNA.310-201ENST00000365063 113 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 Y_RNA.530-201ENST00000384587 101 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 AL590004.1-201ENST00000405321 300 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 RNA5SP237-201ENST00000410414 113 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 HMGN2P22-201ENST00000427588 175 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 AC108059.2-201ENST00000434626 151 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-0.53□□□□□ -2.49
FOXA3P55318 RNU6-765P-201ENST00000516916 99 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 RNU1-54P-201ENST00000517181 120 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 AC127455.1-201ENST00000565496 145 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 MIR3942-201ENST00000585264 109 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 MIR6128-201ENST00000615528 109 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 AC105081.1-201ENST00000617727 106 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 uc_338.36-201ENST00000622331 158 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 Z69908.1-201ENST00000622603 247 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 AC068137.3-201ENST00000639191 341 ntBASIC-0.53□□□□□ -2.49
FOXA3P55318 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.54□□□□□ -2.5
FOXA3P55318 Y_RNA.7-201ENST00000362352 102 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 Y_RNA.146-201ENST00000363549 102 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 RNU4-75P-201ENST00000364621 146 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 RNU6-20P-201ENST00000384106 107 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 SNORA27-201ENST00000384323 126 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 Y_RNA.481-201ENST00000384373 102 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 SNORA32.3-201ENST00000384772 121 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 SNORA40.5-201ENST00000391061 128 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-0.54□□□□□ -2.5
FOXA3P55318 RN7SKP298-201ENST00000515950 94 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 RNU7-115P-201ENST00000516433 55 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 NAMPTP3-201ENST00000569273 224 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 MIR378D2-201ENST00000580636 98 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 MIR2681-201ENST00000581814 105 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 AC024933.1-201ENST00000608472 348 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 AC084368.1-201ENST00000620935 65 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 AL162376.1-201ENST00000624117 175 ntBASIC-0.54□□□□□ -2.5
FOXA3P55318 MIR148A-201ENST00000362215 68 ntBASIC-0.55□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms