Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 NDUFA4P2-201ENST00000489989 244 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 MTND1P19-201ENST00000511780 315 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.49□□□□□ -2.17
SHMT1P34896 AC106754.2-201ENST00000623006 233 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SHMT1P34896 Y_RNA.76-201ENST00000362931 109 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 Y_RNA.292-201ENST00000364904 97 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 SNORA2.2-201ENST00000365473 135 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 MIR452-201ENST00000385020 85 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 MIR802-201ENST00000390235 94 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 RNA5SP445-201ENST00000515889 115 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 AC100767.1-201ENST00000528178 123 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 MIR3937-201ENST00000580135 106 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 MIR6078-201ENST00000611069 100 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
SHMT1P34896 AL365265.1-201ENST00000621045 234 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 AC091895.1-201ENST00000624494 256 ntBASIC1.48□□□□□ -2.17
SHMT1P34896 Y_RNA.24-201ENST00000362508 103 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 Y_RNA.65-201ENST00000362846 100 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 RNU4-10P-201ENST00000364383 140 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 Y_RNA.262-201ENST00000364641 102 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 RNU6-442P-201ENST00000383968 104 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 Y_RNA.489-201ENST00000384410 101 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 Y_RNA.539-201ENST00000384635 107 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 MIR653-201ENST00000385279 96 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 RNU6-322P-201ENST00000516010 103 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 RNA5SP102-201ENST00000516865 106 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 AC090049.2-201ENST00000550377 109 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 AC008507.4-201ENST00000585464 127 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 AL513534.2-201ENST00000603836 250 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 AL365434.2-201ENST00000607979 234 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 AL021707.8-201ENST00000609428 183 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 uc_338.4-201ENST00000616635 176 ntBASIC1.47□□□□□ -2.17
SHMT1P34896 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.47□□□□□ -2.17
SHMT1P34896 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.46□□□□□ -2.18
SHMT1P34896 SNORD116-28-201ENST00000516123 91 ntBASIC1.46□□□□□ -2.18
SHMT1P34896 RNU4-71P-201ENST00000516258 113 ntBASIC1.46□□□□□ -2.18
SHMT1P34896 Y_RNA.680-201ENST00000516441 93 ntBASIC1.46□□□□□ -2.18
SHMT1P34896 RNU6-902P-201ENST00000517212 91 ntBASIC1.46□□□□□ -2.18
SHMT1P34896 AC019176.1-201ENST00000518519 225 ntBASIC1.46□□□□□ -2.18
SHMT1P34896 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.46□□□□□ -2.18
SHMT1P34896 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.46□□□□□ -2.18
SHMT1P34896 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.46□□□□□ -2.18
SHMT1P34896 Y_RNA.60-201ENST00000362831 98 ntBASIC1.45□□□□□ -2.18
SHMT1P34896 Y_RNA.188-201ENST00000363952 111 ntBASIC1.45□□□□□ -2.18
SHMT1P34896 Y_RNA.269-201ENST00000364685 89 ntBASIC1.45□□□□□ -2.18
SHMT1P34896 RNY4P28-201ENST00000365281 93 ntBASIC1.45□□□□□ -2.18
SHMT1P34896 MIR1298-201ENST00000408783 112 ntBASIC1.45□□□□□ -2.18
SHMT1P34896 COX6CP14-201ENST00000469580 174 ntBASIC1.45□□□□□ -2.18
SHMT1P34896 AC092991.1-201ENST00000477176 376 ntBASIC1.45□□□□□ -2.18
SHMT1P34896 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.45□□□□□ -2.18
SHMT1P34896 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.45□□□□□ -2.18
SHMT1P34896 AL161722.3-201ENST00000605789 2983 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 MIR96-201ENST00000362288 78 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 Y_RNA.229-201ENST00000364347 113 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 MIR136-201ENST00000385207 82 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 MT-TG-201ENST00000387429 68 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.44□□□□□ -2.18
SHMT1P34896 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SHMT1P34896 AL049861.1-201ENST00000603130 150 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 AC011921.3-201ENST00000605540 361 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 AL121890.5-201ENST00000620848 304 ntBASIC1.44□□□□□ -2.18
SHMT1P34896 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
SHMT1P34896 RNU6-653P-201ENST00000363074 106 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 RNY3P5-201ENST00000384127 102 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 SNORD38C-201ENST00000384381 69 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 MIR15B-201ENST00000385045 98 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 Y_RNA.587-201ENST00000391210 103 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 AL451046.2-201ENST00000403074 277 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 AC015922.2-201ENST00000435593 184 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 RPL30P7-201ENST00000479312 323 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 RNU6-917P-201ENST00000516294 104 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 RNU6-126P-201ENST00000516685 103 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 RNU7-149P-201ENST00000516739 59 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 RNU6-1271P-201ENST00000517049 105 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 RNU6-111P-201ENST00000517179 105 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 MIR4662B-201ENST00000579498 81 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 FAM106DP-201ENST00000586416 501 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 MIR6504-201ENST00000613520 61 ntBASIC1.43□□□□□ -2.18
SHMT1P34896 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.42□□□□□ -2.18
SHMT1P34896 RNU6-1138P-201ENST00000365359 106 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 RNU4-17P-201ENST00000365598 141 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 Y_RNA.572-201ENST00000384757 98 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 MIR526A1-201ENST00000384897 85 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 MIR616-201ENST00000385293 97 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.42□□□□□ -2.18
SHMT1P34896 RPS29P23-201ENST00000458635 123 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 SNORD77.4-201ENST00000516158 81 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 AL160236.1-201ENST00000556317 195 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 Pinc.1-201ENST00000616452 154 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.42□□□□□ -2.18
SHMT1P34896 RNY1-201ENST00000364228 113 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 SNORD72-201ENST00000390994 80 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 RNU6-955P-201ENST00000410497 104 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 RNU2-55P-201ENST00000411146 174 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 RPS27P16-201ENST00000425758 201 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 RN7SKP164-201ENST00000516138 266 ntBASIC1.41□□□□□ -2.18
SHMT1P34896 RNU6-922P-201ENST00000516753 99 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms