Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNU7-56P-201ENST00000458744 62 ntBASIC0.16□□□□□ -2.38
USF1P22415 MTND4P17-201ENST00000470444 350 ntBASIC0.16□□□□□ -2.38
USF1P22415 AP003327.1-201ENST00000529684 127 ntBASIC0.16□□□□□ -2.38
USF1P22415 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.16□□□□□ -2.38
USF1P22415 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.16□□□□□ -2.38
USF1P22415 DEFB117-201ENST00000602356 141 ntBASIC0.16□□□□□ -2.38
USF1P22415 AL080274.1-201ENST00000605565 220 ntBASIC0.16□□□□□ -2.38
USF1P22415 AC138305.3-201ENST00000624988 240 ntBASIC0.16□□□□□ -2.38
USF1P22415 AC073869.6-201ENST00000640656 341 ntBASIC0.16□□□□□ -2.38
USF1P22415 RNU6-349P-201ENST00000362402 107 ntBASIC0.15□□□□□ -2.39
USF1P22415 RNU6-674P-201ENST00000363831 107 ntBASIC0.15□□□□□ -2.39
USF1P22415 Y_RNA.462-201ENST00000384268 102 ntBASIC0.15□□□□□ -2.39
USF1P22415 Y_RNA.476-201ENST00000384347 108 ntBASIC0.15□□□□□ -2.39
USF1P22415 snoU13.16-201ENST00000459350 104 ntBASIC0.15□□□□□ -2.39
USF1P22415 RNU6-437P-201ENST00000459408 95 ntBASIC0.15□□□□□ -2.39
USF1P22415 SNORA25.12-201ENST00000516202 82 ntBASIC0.15□□□□□ -2.39
USF1P22415 MIR6718-201ENST00000616153 80 ntBASIC0.15□□□□□ -2.39
USF1P22415 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
USF1P22415 MIR103A1-201ENST00000362165 78 ntBASIC0.14□□□□□ -2.39
USF1P22415 SNORD44.1-201ENST00000363202 61 ntBASIC0.14□□□□□ -2.39
USF1P22415 SNORA63C-201ENST00000364578 129 ntBASIC0.14□□□□□ -2.39
USF1P22415 RNU6-708P-201ENST00000384217 107 ntBASIC0.14□□□□□ -2.39
USF1P22415 MIR518A1-201ENST00000385068 85 ntBASIC0.14□□□□□ -2.39
USF1P22415 SNORD72-201ENST00000390994 80 ntBASIC0.14□□□□□ -2.39
USF1P22415 RNU6-679P-201ENST00000391003 106 ntBASIC0.14□□□□□ -2.39
USF1P22415 AL603910.2-201ENST00000407268 136 ntBASIC0.14□□□□□ -2.39
USF1P22415 SNORA40.8-201ENST00000411034 126 ntBASIC0.14□□□□□ -2.39
USF1P22415 SNORD71-201ENST00000411292 86 ntBASIC0.14□□□□□ -2.39
USF1P22415 AC015818.7-201ENST00000428754 109 ntBASIC0.14□□□□□ -2.39
USF1P22415 AC087499.7-201ENST00000441958 109 ntBASIC0.14□□□□□ -2.39
USF1P22415 AC107297.1-201ENST00000459991 176 ntBASIC0.14□□□□□ -2.39
USF1P22415 AC022523.2-201ENST00000561045 150 ntBASIC0.14□□□□□ -2.39
USF1P22415 RPL23AP91-201ENST00000569211 455 ntBASIC0.14□□□□□ -2.39
USF1P22415 VN1R91P-201ENST00000594377 169 ntBASIC0.14□□□□□ -2.39
USF1P22415 AC020891.4-201ENST00000605745 93 ntBASIC0.14□□□□□ -2.39
USF1P22415 AC084782.3-201ENST00000612282 578 ntBASIC0.14□□□□□ -2.39
USF1P22415 RNU6-490P-201ENST00000362985 107 ntBASIC0.13□□□□□ -2.39
USF1P22415 SNORD81.1-201ENST00000363064 77 ntBASIC0.13□□□□□ -2.39
USF1P22415 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
USF1P22415 Y_RNA.412-201ENST00000384001 104 ntBASIC0.13□□□□□ -2.39
USF1P22415 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.13□□□□□ -2.39
USF1P22415 MIR938-201ENST00000401216 83 ntBASIC0.13□□□□□ -2.39
USF1P22415 SNRPGP12-201ENST00000449481 213 ntBASIC0.13□□□□□ -2.39
USF1P22415 RNU7-62P-201ENST00000458856 62 ntBASIC0.13□□□□□ -2.39
USF1P22415 MIR4431-201ENST00000579990 94 ntBASIC0.13□□□□□ -2.39
USF1P22415 AL355297.3-201ENST00000604082 446 ntBASIC0.13□□□□□ -2.39
USF1P22415 AC133104.2-201ENST00000615272 193 ntBASIC0.13□□□□□ -2.39
USF1P22415 AC010205.1-201ENST00000616668 449 ntBASIC0.13□□□□□ -2.39
USF1P22415 RNA5SP517-201ENST00000364724 117 ntBASIC0.12□□□□□ -2.39
USF1P22415 Y_RNA.279-201ENST00000364763 95 ntBASIC0.12□□□□□ -2.39
USF1P22415 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
USF1P22415 SNORD100-201ENST00000408573 76 ntBASIC0.12□□□□□ -2.39
USF1P22415 SNORA36B-201ENST00000410438 131 ntBASIC0.12□□□□□ -2.39
USF1P22415 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.12□□□□□ -2.39
USF1P22415 Y_RNA.653-201ENST00000459091 95 ntBASIC0.12□□□□□ -2.39
USF1P22415 SNORD11-201ENST00000459124 84 ntBASIC0.12□□□□□ -2.39
USF1P22415 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.12□□□□□ -2.39
USF1P22415 Y_RNA.772-201ENST00000606692 102 ntBASIC0.12□□□□□ -2.39
USF1P22415 AC025253.1-201ENST00000613623 543 ntBASIC0.12□□□□□ -2.39
USF1P22415 uc_338.16-201ENST00000621804 95 ntBASIC0.12□□□□□ -2.39
USF1P22415 SNORA24-201ENST00000384096 131 ntBASIC0.11□□□□□ -2.39
USF1P22415 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
USF1P22415 MIR1278-201ENST00000408753 81 ntBASIC0.11□□□□□ -2.39
USF1P22415 AC096644.2-201ENST00000429278 159 ntBASIC0.11□□□□□ -2.39
USF1P22415 MIR18B-201ENST00000454574 71 ntBASIC0.11□□□□□ -2.39
USF1P22415 SNORA18.4-201ENST00000516440 124 ntBASIC0.11□□□□□ -2.39
USF1P22415 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.11□□□□□ -2.39
USF1P22415 AC011373.1-201ENST00000607270 237 ntBASIC0.11□□□□□ -2.39
USF1P22415 AC022306.2-201ENST00000617563 647 ntBASIC0.11□□□□□ -2.39
USF1P22415 AC134878.1-201ENST00000619901 243 ntBASIC0.11□□□□□ -2.39
USF1P22415 RNU4-50P-201ENST00000364361 141 ntBASIC0.1□□□□□ -2.39
USF1P22415 Y_RNA.433-201ENST00000384089 102 ntBASIC0.1□□□□□ -2.39
USF1P22415 PDCL2P1-201ENST00000419302 352 ntBASIC0.1□□□□□ -2.39
USF1P22415 AC090844.1-201ENST00000422019 156 ntBASIC0.1□□□□□ -2.39
USF1P22415 RNU7-141P-201ENST00000459304 62 ntBASIC0.1□□□□□ -2.39
USF1P22415 RNU7-110P-201ENST00000516891 62 ntBASIC0.1□□□□□ -2.39
USF1P22415 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.1□□□□□ -2.39
USF1P22415 AC006600.1-201ENST00000572529 153 ntBASIC0.1□□□□□ -2.39
USF1P22415 AC090897.1-201ENST00000580909 226 ntBASIC0.1□□□□□ -2.39
USF1P22415 Y_RNA.160-201ENST00000363677 92 ntBASIC0.09□□□□□ -2.4
USF1P22415 Y_RNA.178-201ENST00000363832 102 ntBASIC0.09□□□□□ -2.4
USF1P22415 MIR559-201ENST00000385188 96 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-1319P-201ENST00000390855 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-747P-201ENST00000390928 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-241P-201ENST00000391148 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-447P-201ENST00000410293 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-1118P-201ENST00000410382 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-1076P-201ENST00000410397 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-355P-201ENST00000410427 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-791P-201ENST00000410467 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-705P-201ENST00000410601 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-1100P-201ENST00000410691 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-860P-201ENST00000410860 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-1217P-201ENST00000411276 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU6-785P-201ENST00000411324 104 ntBASIC0.09□□□□□ -2.4
USF1P22415 FCF1P9-201ENST00000412546 282 ntBASIC0.09□□□□□ -2.4
USF1P22415 BTF3P11-201ENST00000426582 477 ntBASIC0.09□□□□□ -2.4
USF1P22415 AC236972.2-201ENST00000434979 310 ntBASIC0.09□□□□□ -2.4
USF1P22415 RNU7-67P-201ENST00000459003 62 ntBASIC0.09□□□□□ -2.4
USF1P22415 AC091959.1-201ENST00000495857 238 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 136.9 ms