Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 PDCL2P1-201ENST00000419302 352 ntBASIC-0.41□□□□□ -2.48
LIMS3P0CW19 RNU6-782P-201ENST00000516852 104 ntBASIC-0.41□□□□□ -2.48
LIMS3P0CW19 Y_RNA.708-201ENST00000516950 96 ntBASIC-0.41□□□□□ -2.48
LIMS3P0CW19 RNU6-958P-201ENST00000516995 106 ntBASIC-0.41□□□□□ -2.48
LIMS3P0CW19 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC-0.41□□□□□ -2.48
LIMS3P0CW19 OSBPL9P5-201ENST00000542581 171 ntBASIC-0.41□□□□□ -2.48
LIMS3P0CW19 uc_338.22-201ENST00000622722 187 ntBASIC-0.41□□□□□ -2.48
LIMS3P0CW19 AC091304.10-201ENST00000641554 121 ntBASIC-0.41□□□□□ -2.48
LIMS3P0CW19 Y_RNA.230-201ENST00000364348 109 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 Y_RNA.241-201ENST00000364470 117 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 MIR613-201ENST00000385248 95 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 MIR548H2-201ENST00000408874 88 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 MTCO1P5-201ENST00000433573 344 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 SUMO1P3-201ENST00000439961 304 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 MTND1P1-201ENST00000445453 368 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 RNU7-159P-201ENST00000459284 62 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 RNU6-307P-201ENST00000516743 106 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 AC005730.3-201ENST00000583067 366 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 AC022441.3-201ENST00000605737 136 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.42□□□□□ -2.48
LIMS3P0CW19 MIR548AY-201ENST00000617669 107 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 MIR3974-201ENST00000637126 96 ntBASIC-0.42□□□□□ -2.48
LIMS3P0CW19 MIR30D-201ENST00000362283 70 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 RNU6-756P-201ENST00000383997 107 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 Y_RNA.547-201ENST00000384654 119 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 SNORA69.1-201ENST00000390904 137 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 RNU6-269P-201ENST00000391077 97 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 SNORA75.4-201ENST00000391278 119 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 RNU6-1148P-201ENST00000410992 104 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 POLR2KP2-201ENST00000438155 177 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 RNU6-966P-201ENST00000516479 104 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 AC109635.3-201ENST00000529536 185 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 AL080274.1-201ENST00000605565 220 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 MIR8066-201ENST00000617280 78 ntBASIC-0.43□□□□□ -2.48
LIMS3P0CW19 Y_RNA.157-201ENST00000363638 102 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 Y_RNA.258-201ENST00000364613 105 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU4-75P-201ENST00000364621 146 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNY3P4-201ENST00000384428 101 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU6-913P-201ENST00000390913 95 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 SNORD115-47-201ENST00000391226 86 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU4-83P-201ENST00000410863 133 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU6-602P-201ENST00000411155 105 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.44□□□□□ -2.48
LIMS3P0CW19 MTND1P2-201ENST00000430604 821 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU6-437P-201ENST00000459408 95 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 PRDX4P1-201ENST00000507189 574 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 Y_RNA.682-201ENST00000516457 100 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU7-25P-201ENST00000516544 62 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU7-53P-201ENST00000516705 60 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNA5SP330-201ENST00000517096 96 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 AP000942.4-201ENST00000604811 241 ntBASIC-0.44□□□□□ -2.48
LIMS3P0CW19 RNU6-1115P-201ENST00000362490 106 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 RNU6-674P-201ENST00000363831 107 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 SNORA1.1-201ENST00000364671 133 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 Y_RNA.355-201ENST00000365462 98 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 SNORD78.2-201ENST00000391076 69 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 MIR548O-201ENST00000408583 114 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 SNORD93-201ENST00000408813 74 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 Y_RNA.592-201ENST00000410274 109 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 RNA5SP127-201ENST00000411051 133 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 FCF1P9-201ENST00000412546 282 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 AC024067.1-201ENST00000426199 223 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 AC098826.2-201ENST00000452011 651 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 SNORD11-201ENST00000459124 84 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 MIR499B-201ENST00000636498 73 ntBASIC-0.45□□□□□ -2.48
LIMS3P0CW19 RNU6-1090P-201ENST00000364065 94 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 SNORA2A-201ENST00000383885 135 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 SNORD116-9-201ENST00000384000 95 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 SNORD116-3-201ENST00000384287 95 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 SNORD116-7-201ENST00000384404 95 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 SNORD116-5-201ENST00000384462 95 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 Y_RNA.508-201ENST00000384502 114 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 MIR625-201ENST00000385047 85 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 AL590004.1-201ENST00000405321 300 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 RNA5SP118-201ENST00000410385 109 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 RPL39P34-201ENST00000477141 156 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 RPL7P42-201ENST00000481005 679 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 RNA5SP47-201ENST00000517230 109 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 RN7SKP295-201ENST00000517264 153 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 AC245008.1-201ENST00000608123 476 ntBASIC-0.46□□□□□ -2.48
LIMS3P0CW19 RNU6-1309P-201ENST00000363305 108 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 RNU6-99P-201ENST00000364721 107 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 RNU6-740P-201ENST00000364734 105 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 RNU6-652P-201ENST00000365488 107 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 SNORA26-201ENST00000391286 122 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 MIR1278-201ENST00000408753 81 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 AF228730.4-201ENST00000421457 183 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 AC087499.4-201ENST00000448505 178 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 RPL30P15-201ENST00000457129 321 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 SNORD4A-201ENST00000459174 72 ntBASIC-0.47□□□□□ -2.48
LIMS3P0CW19 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-0.47□□□□□ -2.48
LIMS3P0CW19 RNU4-50P-201ENST00000364361 141 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 SNORA40.5-201ENST00000391061 128 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 HMGN1P33-201ENST00000432945 451 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 172.8 ms