Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
COL3A1P02461 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.16□□□□□ -2.06
COL3A1P02461 Y_RNA.52-201ENST00000362760 96 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 RNU6-508P-201ENST00000363231 103 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 RNU6-944P-201ENST00000364023 107 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 SNORA67.5-201ENST00000391036 107 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 RPS4XP11-201ENST00000446897 772 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 MRPS36P2-201ENST00000512569 299 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 RNU6-586P-201ENST00000517265 104 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 DNAJC19P9-201ENST00000555084 351 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 MIR4438-201ENST00000585271 93 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 BX248123.2-201ENST00000606318 124 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 AC106754.2-201ENST00000623006 233 ntBASIC2.16□□□□□ -2.06
COL3A1P02461 RNU1-22P-201ENST00000363334 158 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 RNU6-1083P-201ENST00000384022 107 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 Y_RNA.486-201ENST00000384398 107 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 MIR562-201ENST00000384894 95 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 MIR1263-201ENST00000408324 86 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 HMGN2P18-201ENST00000450680 270 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 AC097462.1-201ENST00000514125 324 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 SNORA4.4-201ENST00000515921 135 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 IGLV3-17-201ENST00000519099 244 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 MIR3117-201ENST00000584034 78 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 SNORA4-201ENST00000584302 138 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 AL645939.4-201ENST00000604495 135 ntBASIC2.15□□□□□ -2.06
COL3A1P02461 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL3A1P02461 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
COL3A1P02461 MIR450A1-201ENST00000362262 91 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 RNU6-1274P-201ENST00000384557 107 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 Y_RNA.528-201ENST00000384575 108 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 RNU11-5P-201ENST00000391216 129 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 RNA5SP136-201ENST00000410906 107 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.14□□□□□ -2.07
COL3A1P02461 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.14□□□□□ -2.07
COL3A1P02461 RNU6-113P-201ENST00000516653 101 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 AC018630.3-201ENST00000542637 96 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 MIR4446-201ENST00000578505 67 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
COL3A1P02461 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
COL3A1P02461 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL3A1P02461 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
COL3A1P02461 Y_RNA.66-201ENST00000362862 102 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 Y_RNA.242-201ENST00000364473 110 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 RNU6-392P-201ENST00000364926 101 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 MIR1253-201ENST00000408273 105 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 MIR1302-4-201ENST00000408701 150 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 RNU6-1077P-201ENST00000410506 102 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 BX510359.4-201ENST00000423750 193 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 RPS29P12-201ENST00000460178 152 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 RNA5SP364-201ENST00000516938 78 ntBASIC2.14□□□□□ -2.07
COL3A1P02461 Y_RNA.281-201ENST00000364774 94 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 RNU6-1292P-201ENST00000383856 107 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 RNU6-106P-201ENST00000384405 107 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 MIR520G-201ENST00000385064 90 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.13□□□□□ -2.07
COL3A1P02461 RN7SL274P-201ENST00000492268 272 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 RNA5SP82-201ENST00000516707 92 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 MIR3129-201ENST00000581095 76 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.13□□□□□ -2.07
COL3A1P02461 MIR502-201ENST00000606349 86 ntBASIC2.13□□□□□ -2.07
COL3A1P02461 RNU6-1107P-201ENST00000364817 104 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 RNA5SP125-201ENST00000364843 120 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 RNU1-101P-201ENST00000391171 127 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 Y_RNA.621-201ENST00000411065 96 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 AC016909.1-201ENST00000415916 166 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 HMGN2P38-201ENST00000423806 265 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 RNU6-1146P-201ENST00000516282 102 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 RNU6-844P-201ENST00000517175 102 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.12□□□□□ -2.07
COL3A1P02461 AC007012.1-201ENST00000567192 175 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 U6.73-201ENST00000619194 103 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 uc_338.20-201ENST00000621563 178 ntBASIC2.12□□□□□ -2.07
COL3A1P02461 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.11□□□□□ -2.07
COL3A1P02461 RNU6-546P-201ENST00000383991 107 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 RNU7-95P-201ENST00000459222 64 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 Y_RNA.714-201ENST00000517065 90 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 IGKV1-22-201ENST00000524313 326 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 AC007751.1-201ENST00000529260 376 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 uc_338.28-201ENST00000612082 187 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.11□□□□□ -2.07
COL3A1P02461 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
COL3A1P02461 Y_RNA.85-201ENST00000363014 111 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 SNORA1-201ENST00000384107 130 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 RNU4-52P-201ENST00000384209 138 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 RPS29P29-201ENST00000456396 171 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 HMGN1P7-201ENST00000491722 313 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 RNU6-965P-201ENST00000516721 96 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 RNU6-1096P-201ENST00000517089 102 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 MIR6504-201ENST00000613520 61 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 AL591926.4-201ENST00000616895 298 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 MIR5739-201ENST00000619803 80 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 MIR1248-201ENST00000629190 106 ntBASIC2.1□□□□□ -2.07
COL3A1P02461 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
COL3A1P02461 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.09□□□□□ -2.07
COL3A1P02461 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
COL3A1P02461 RNU6-1113P-201ENST00000384348 107 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 MIR570-201ENST00000384917 97 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 MIR1302-5-201ENST00000408164 150 ntBASIC2.09□□□□□ -2.07
COL3A1P02461 MICF-203ENST00000432679 129 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms