| HPRT1 | P00492 | RNU6-699P-201 | ENST00000517081 | 110 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | MIR4431-201 | ENST00000579990 | 94 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | AC008608.1-201 | ENST00000603910 | 127 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | RNU6-490P-201 | ENST00000362985 | 107 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | RNU6-674P-201 | ENST00000363831 | 107 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | RNU4-50P-201 | ENST00000364361 | 141 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | SNORD81.2-201 | ENST00000365153 | 76 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | RPS27-201 | ENST00000368567 | 350 nt | APPRIS P1 TSL 1 (best) BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | Y_RNA.462-201 | ENST00000384268 | 102 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | Y_RNA.547-201 | ENST00000384654 | 119 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | MIR598-201 | ENST00000384868 | 97 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | SNORD100-201 | ENST00000408573 | 76 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | RNU2-14P-201 | ENST00000411053 | 191 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | MTND1P34-201 | ENST00000438556 | 671 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | RNA5SP436-201 | ENST00000516020 | 115 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | hsa-mir-548d-2.1-201 | ENST00000582790 | 97 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | AC005357.1-201 | ENST00000588399 | 301 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | Y_RNA.772-201 | ENST00000606692 | 102 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | AC133104.2-201 | ENST00000615272 | 193 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | MIR6740-201 | ENST00000618268 | 113 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | IST1-227 | ENST00000626438 | 126 nt | TSL 5 BASIC | 0.1 | □□□□□ -2.39 | | |
| HPRT1 | P00492 | Y_RNA.241-201 | ENST00000364470 | 117 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORA63C-201 | ENST00000364578 | 129 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORA24-201 | ENST00000384096 | 131 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-364P-201 | ENST00000384387 | 107 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | Y_RNA.494-201 | ENST00000384432 | 111 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNA5SP299-201 | ENST00000391203 | 116 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU4-30P-201 | ENST00000410245 | 143 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | ATP6V0E1P1-201 | ENST00000412537 | 226 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU7-102P-201 | ENST00000458948 | 62 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | hsa-mir-3119-1.1-201 | ENST00000577602 | 85 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC090897.1-201 | ENST00000580909 | 226 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AL355297.3-201 | ENST00000604082 | 446 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC010205.1-201 | ENST00000616668 | 449 nt | BASIC | 0.09 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | Y_RNA.269-201 | ENST00000364685 | 89 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORA72.4-201 | ENST00000384174 | 132 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6ATAC19P-201 | ENST00000408096 | 110 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR548O-201 | ENST00000408583 | 114 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | FCF1P9-201 | ENST00000412546 | 282 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC073261.1-201 | ENST00000429409 | 121 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | snoU13.18-201 | ENST00000459483 | 104 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-958P-201 | ENST00000516995 | 106 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC093783.1-201 | ENST00000612976 | 329 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | uc_338.16-201 | ENST00000621804 | 95 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR924-201 | ENST00000638017 | 53 nt | BASIC | 0.08 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | OMD-201 | ENST00000375550 | 2449 nt | APPRIS P1 TSL 1 (best) BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD118-201 | ENST00000363593 | 134 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | Y_RNA.474-201 | ENST00000384341 | 102 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD38B-201 | ENST00000384690 | 67 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-21P-201 | ENST00000384710 | 107 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR518F-201 | ENST00000384973 | 87 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR125B2-201 | ENST00000385128 | 89 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-1319P-201 | ENST00000390855 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-747P-201 | ENST00000390928 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-241P-201 | ENST00000391148 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR1295A-201 | ENST00000408463 | 79 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-447P-201 | ENST00000410293 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-1118P-201 | ENST00000410382 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-1076P-201 | ENST00000410397 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-355P-201 | ENST00000410427 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-791P-201 | ENST00000410467 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-705P-201 | ENST00000410601 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-1100P-201 | ENST00000410691 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-860P-201 | ENST00000410860 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-1217P-201 | ENST00000411276 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-785P-201 | ENST00000411324 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC010177.1-201 | ENST00000547819 | 366 nt | TSL 3 BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC113139.1-201 | ENST00000605049 | 239 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | U6.90-201 | ENST00000614007 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | U6.70-201 | ENST00000620287 | 104 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD38B-202 | ENST00000625943 | 69 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR4272-201 | ENST00000635924 | 64 nt | BASIC | 0.07 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU4-80P-201 | ENST00000363200 | 141 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-801P-201 | ENST00000364087 | 105 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-815P-201 | ENST00000384080 | 113 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | Y_RNA.458-201 | ENST00000384240 | 102 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-937P-201 | ENST00000384325 | 106 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORA8.2-201 | ENST00000384372 | 139 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | Y_RNA.551-201 | ENST00000384661 | 102 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU6-876P-201 | ENST00000391295 | 104 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR1257-201 | ENST00000408490 | 117 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU2-70P-201 | ENST00000410718 | 179 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MIR18B-201 | ENST00000454574 | 71 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC010655.3-201 | ENST00000478818 | 450 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | RNU7-156P-201 | ENST00000517214 | 74 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | LINC01378-205 | ENST00000615833 | 158 nt | TSL 5 BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | AC078938.1-201 | ENST00000620993 | 318 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | MTND4LP32-201 | ENST00000636111 | 270 nt | BASIC | 0.06 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | ANGPTL3-201 | ENST00000371129 | 2805 nt | APPRIS P1 TSL 1 (best) BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-34-201 | ENST00000362441 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-12-201 | ENST00000362583 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-29-201 | ENST00000362834 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-9-201 | ENST00000362912 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-21-201 | ENST00000362963 | 81 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-14-201 | ENST00000363090 | 81 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-13-201 | ENST00000363358 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-41-201 | ENST00000363608 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-11-201 | ENST00000363616 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-5-201 | ENST00000363633 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |
| HPRT1 | P00492 | SNORD115-39-201 | ENST00000363694 | 82 nt | BASIC | 0.05 | □□□□□ -2.4 | | |