Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RNU6-937P-201ENST00000384325 106 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 Y_RNA.496-201ENST00000384444 101 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 RNA5SP193-201ENST00000410353 107 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 AC090844.1-201ENST00000422019 156 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 RNU6-277P-201ENST00000516272 106 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 Y_RNA.718-201ENST00000517110 102 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 SNORD116.3-201ENST00000517176 78 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 MIR1273G-201ENST00000577677 100 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 AC084781.2-201ENST00000615568 161 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 AC104985.2-201ENST00000620598 500 ntBASIC0.3□□□□□ -2.36
SEMA3DO95025 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
SEMA3DO95025 RNU4-50P-201ENST00000364361 141 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 Y_RNA.813-201ENST00000364639 102 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 MT-TN-201ENST00000387400 73 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 AC098614.3-201ENST00000438957 440 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.29□□□□□ -2.36
SEMA3DO95025 SNORD11-201ENST00000459124 84 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 RNU2-13P-201ENST00000515909 113 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 RNA5SP134-201ENST00000516492 96 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 MIR4771-2-201ENST00000577758 74 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 MIR2681-201ENST00000581814 105 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 MIR4771-1-201ENST00000582617 74 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 AP000753.3-201ENST00000604083 169 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 AL162730.1-201ENST00000605734 292 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 AC006441.5-201ENST00000612680 209 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.29□□□□□ -2.36
SEMA3DO95025 MIR377-201ENST00000362145 69 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 MIR18A-201ENST00000362310 71 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 RNU4-80P-201ENST00000363200 141 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 Y_RNA.143-201ENST00000363520 106 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 RNU6-674P-201ENST00000363831 107 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 RNU6-801P-201ENST00000364087 105 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 SNORA1.2-201ENST00000365189 134 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 Y_RNA.551-201ENST00000384661 102 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 Y_RNA.619-201ENST00000410951 90 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 RNU6-847P-201ENST00000411115 108 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.28□□□□□ -2.36
SEMA3DO95025 MIR3612-201ENST00000579753 87 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 AC005357.1-201ENST00000588399 301 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 AC092447.9-201ENST00000603395 144 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 LARP7P1-201ENST00000605576 316 ntBASIC0.28□□□□□ -2.36
SEMA3DO95025 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.28□□□□□ -2.36
SEMA3DO95025 MIRLET7D-201ENST00000362263 87 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.80-201ENST00000362996 102 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.142-201ENST00000363491 102 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.286-201ENST00000364813 102 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.383-201ENST00000383855 97 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.485-201ENST00000384395 102 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.494-201ENST00000384432 111 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 RNU6-21P-201ENST00000384710 107 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 SNORA26.5-201ENST00000391215 123 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 AC138393.2-201ENST00000414742 246 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 SCARNA8-201ENST00000515924 131 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.661-201ENST00000516003 99 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 RNU7-25P-201ENST00000516544 62 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 SNORA62.5-201ENST00000516634 120 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 RNU4-77P-201ENST00000516692 156 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 SNORA20.3-201ENST00000516880 132 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 RPS29P30-201ENST00000600975 111 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 AC020891.4-201ENST00000605745 93 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 AL121655.1-201ENST00000605811 308 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 uc_338.4-201ENST00000616635 176 ntBASIC0.27□□□□□ -2.37
SEMA3DO95025 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.27□□□□□ -2.37
SEMA3DO95025 Y_RNA.384-201ENST00000383909 102 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 SNORA72.4-201ENST00000384174 132 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 Y_RNA.547-201ENST00000384654 119 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 MIR4804-201ENST00000581683 73 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 MIR4676-201ENST00000583078 72 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 MIR4264-201ENST00000583520 66 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 MIR1302-1-201ENST00000637932 143 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 MIR924-201ENST00000638017 53 ntBASIC0.26□□□□□ -2.37
SEMA3DO95025 AC090625.1-201ENST00000357130 210 ntBASIC0.25□□□□□ -2.37
SEMA3DO95025 RNU6-1115P-201ENST00000362490 106 ntBASIC0.25□□□□□ -2.37
SEMA3DO95025 Y_RNA.439-201ENST00000384119 94 ntBASIC0.25□□□□□ -2.37
SEMA3DO95025 SNORD63-201ENST00000384262 68 ntBASIC0.25□□□□□ -2.37
SEMA3DO95025 AL160004.2-201ENST00000432935 350 ntBASIC0.25□□□□□ -2.37
SEMA3DO95025 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.25□□□□□ -2.37
SEMA3DO95025 SNORD58B-201ENST00000607313 66 ntBASIC0.25□□□□□ -2.37
SEMA3DO95025 uc_338.6-201ENST00000613544 171 ntBASIC0.25□□□□□ -2.37
SEMA3DO95025 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.25□□□□□ -2.37
SEMA3DO95025 MIR330-201ENST00000362196 94 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 Y_RNA.39-201ENST00000362620 98 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 Y_RNA.187-201ENST00000363918 113 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 Y_RNA.390-201ENST00000383932 102 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 RNU6-679P-201ENST00000391003 106 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 BTF3P11-201ENST00000426582 477 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 POLR2KP2-201ENST00000438155 177 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 RNU7-56P-201ENST00000458744 62 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 AC091959.1-201ENST00000495857 238 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.24□□□□□ -2.37
SEMA3DO95025 RNU6-1007P-201ENST00000516586 107 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.24□□□□□ -2.37
SEMA3DO95025 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 AL132765.2-201ENST00000610812 351 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.24□□□□□ -2.37
SEMA3DO95025 RNA5SP325-201ENST00000363756 130 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms