Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC027335.2-201ENST00000624030 375 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 AC091895.1-201ENST00000624494 256 ntBASIC1.29□□□□□ -2.2
HOXC11O43248 SNORA63C-201ENST00000364578 129 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 SNORA70.7-201ENST00000384159 133 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 Y_RNA.459-201ENST00000384251 102 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 Y_RNA.461-201ENST00000384263 103 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 MIR526A2-201ENST00000390198 65 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 SNORD12-201ENST00000391002 90 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 RNU6-830P-201ENST00000516353 107 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 MIR5688-201ENST00000580619 83 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 MIR3192-201ENST00000584920 77 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 AL049861.1-201ENST00000603130 150 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 AL391903.3-201ENST00000612158 163 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 AP001282.2-201ENST00000616149 309 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 AC015726.2-201ENST00000620112 122 ntBASIC1.28□□□□□ -2.2
HOXC11O43248 RNA5SP48-201ENST00000363969 126 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 RNU6-211P-201ENST00000384047 107 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 SNORA8.3-201ENST00000384679 139 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 AL591704.2-201ENST00000421658 181 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 RNU7-149P-201ENST00000516739 59 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 RNA5SP404-201ENST00000517118 132 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.27□□□□□ -2.21
HOXC11O43248 AC068338.1-201ENST00000565567 176 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 AC006441.5-201ENST00000612680 209 ntBASIC1.27□□□□□ -2.21
HOXC11O43248 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HOXC11O43248 MIR335-201ENST00000362173 94 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 SNORA1.2-201ENST00000365189 134 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 AL603910.2-201ENST00000407268 136 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 AC063976.4-201ENST00000421971 163 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 SNRPGP14-201ENST00000435400 219 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 SNORD79.1-201ENST00000516069 84 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 RN7SKP164-201ENST00000516138 266 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 AC136443.5-201ENST00000603741 370 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 U2.14-201ENST00000615943 113 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.26□□□□□ -2.21
HOXC11O43248 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.26□□□□□ -2.21
HOXC11O43248 AL442644.1-201ENST00000454390 3105 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 Y_RNA.117-201ENST00000363294 101 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 RNU6-738P-201ENST00000384531 106 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 U8.17-201ENST00000391292 132 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.25□□□□□ -2.21
HOXC11O43248 RNU7-41P-201ENST00000515917 61 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 SNORD116-28-201ENST00000516123 91 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 Y_RNA.679-201ENST00000516416 91 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 AL117187.1-201ENST00000555482 181 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 MIR4662B-201ENST00000579498 81 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 MIR4719-201ENST00000585233 84 ntBASIC1.25□□□□□ -2.21
HOXC11O43248 MIR103A2-201ENST00000362154 78 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 RNA5SP264-201ENST00000363115 107 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 Y_RNA.149-201ENST00000363558 117 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 MIR548F4-201ENST00000408515 105 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 Y_RNA.590-201ENST00000410140 107 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 COX6CP14-201ENST00000469580 174 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 RNU6-126P-201ENST00000516685 103 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 MIR548AR-201ENST00000582191 57 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 PRELID3BP2-201ENST00000605362 201 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 AL021707.8-201ENST00000609428 183 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 AC008133.2-201ENST00000624540 351 ntBASIC1.24□□□□□ -2.21
HOXC11O43248 Y_RNA.24-201ENST00000362508 103 ntBASIC1.23□□□□□ -2.21
HOXC11O43248 RNU6-740P-201ENST00000364734 105 ntBASIC1.23□□□□□ -2.21
HOXC11O43248 Y_RNA.363-201ENST00000365529 113 ntBASIC1.23□□□□□ -2.21
HOXC11O43248 Y_RNA.587-201ENST00000391210 103 ntBASIC1.23□□□□□ -2.21
HOXC11O43248 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.23□□□□□ -2.21
HOXC11O43248 RNU7-90P-201ENST00000459216 62 ntBASIC1.23□□□□□ -2.21
HOXC11O43248 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.23□□□□□ -2.21
HOXC11O43248 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.23□□□□□ -2.21
HOXC11O43248 MIR4251-201ENST00000635819 61 ntBASIC1.23□□□□□ -2.21
HOXC11O43248 SNORA25.3-201ENST00000363205 127 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 RNU1-124P-201ENST00000363861 145 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 RNU4-10P-201ENST00000364383 140 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 RNU6-1138P-201ENST00000365359 106 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 Y_RNA.483-201ENST00000384380 101 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.22□□□□□ -2.21
HOXC11O43248 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.22□□□□□ -2.21
HOXC11O43248 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.22□□□□□ -2.21
HOXC11O43248 MTCO2P24-201ENST00000515611 426 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 SCARNA8-201ENST00000515924 131 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.22□□□□□ -2.21
HOXC11O43248 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.22□□□□□ -2.21
HOXC11O43248 AC008163.1-202ENST00000636004 2889 ntBASIC1.22□□□□□ -2.21
HOXC11O43248 AC068700.1-201ENST00000565862 3754 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 Y_RNA.47-201ENST00000362697 108 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 Y_RNA.330-201ENST00000365230 109 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 Y_RNA.370-201ENST00000365589 108 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 MIR19B1-201ENST00000384829 87 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 MT-TW-201ENST00000387382 68 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 AL078595.1-201ENST00000404458 226 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 AC002429.1-201ENST00000437672 148 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 RNU7-21P-201ENST00000459430 62 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 AC107297.1-201ENST00000459991 176 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 RNU7-181P-201ENST00000517234 74 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 AL360085.1-201ENST00000604713 532 ntBASIC1.21□□□□□ -2.22
HOXC11O43248 Y_RNA.116-201ENST00000363292 103 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 Y_RNA.191-201ENST00000363972 113 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 MIR626-201ENST00000385032 94 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 SNORD28B-201ENST00000390993 75 ntBASIC1.2□□□□□ -2.22
HOXC11O43248 MIR548O-201ENST00000408583 114 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms