Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 MIR337-201ENST00000362281 93 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 Y_RNA.54-201ENST00000362766 105 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 Y_RNA.164-201ENST00000363709 102 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 Y_RNA.363-201ENST00000365529 113 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 SNORD28B-201ENST00000390993 75 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 Y_RNA.587-201ENST00000391210 103 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 RPS29P29-201ENST00000456396 171 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 snoU13.25-201ENST00000458945 104 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 SNORA31.4-201ENST00000516049 129 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 SCARNA15.1-201ENST00000516384 125 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 Y_RNA.679-201ENST00000516416 91 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 RNU7-149P-201ENST00000516739 59 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 RNU7-181P-201ENST00000517234 74 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 MIR4764-201ENST00000580680 88 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 Y_RNA.802-201ENST00000614892 130 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 U6.104-201ENST00000637979 90 ntBASIC1.03□□□□□ -2.24
NKX6-3A6NJ46 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
NKX6-3A6NJ46 UBE2WP1-201ENST00000362030 340 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.149-201ENST00000363558 117 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 SNORA70.7-201ENST00000384159 133 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.590-201ENST00000410140 107 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 SNRPGP14-201ENST00000435400 219 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 OR2A41P-201ENST00000473586 105 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 RN7SKP164-201ENST00000516138 266 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 RNU6-1007P-201ENST00000516586 107 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 AC068338.1-201ENST00000565567 176 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 MIR548AR-201ENST00000582191 57 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 U2.14-201ENST00000615943 113 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 Pinc.1-201ENST00000616452 154 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 uc_338.4-201ENST00000616635 176 ntBASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.02□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.162-201ENST00000363683 102 ntBASIC1.01□□□□□ -2.25
NKX6-3A6NJ46 RNU6-472P-201ENST00000384299 107 ntBASIC1.01□□□□□ -2.25
NKX6-3A6NJ46 MIR15B-201ENST00000385045 98 ntBASIC1.01□□□□□ -2.25
NKX6-3A6NJ46 RNU6-1054P-201ENST00000411293 104 ntBASIC1.01□□□□□ -2.25
NKX6-3A6NJ46 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.01□□□□□ -2.25
NKX6-3A6NJ46 AC245047.8-201ENST00000456455 284 ntBASIC1.01□□□□□ -2.25
NKX6-3A6NJ46 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.238-201ENST00000364441 102 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.330-201ENST00000365230 109 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 RNU6-53P-201ENST00000365367 106 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 SNORA8.3-201ENST00000384679 139 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1□□□□□ -2.25
NKX6-3A6NJ46 RNU2-38P-201ENST00000410856 79 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1□□□□□ -2.25
NKX6-3A6NJ46 MRPL35P3-201ENST00000421557 364 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 AL358176.2-201ENST00000425769 204 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.666-201ENST00000516187 112 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 AC012433.1-201ENST00000588916 398 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1□□□□□ -2.25
NKX6-3A6NJ46 MIR8070-201ENST00000616510 88 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1□□□□□ -2.25
NKX6-3A6NJ46 AC008163.1-202ENST00000636004 2889 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.277-201ENST00000364754 102 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 SNORA75.2-201ENST00000391138 150 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 SNORA75.3-201ENST00000391231 150 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 RNA5SP496-201ENST00000391240 109 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 U8.17-201ENST00000391292 132 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 AL078595.1-201ENST00000404458 226 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 RNU7-25P-201ENST00000516544 62 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 RNU7-43P-201ENST00000516554 64 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 AC090821.2-201ENST00000523552 176 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 AL021707.8-201ENST00000609428 183 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 AL391903.3-201ENST00000612158 163 ntBASIC0.99□□□□□ -2.25
NKX6-3A6NJ46 MIR103A2-201ENST00000362154 78 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.229-201ENST00000364347 113 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 SNORA22-201ENST00000383907 134 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 SNORA22C-201ENST00000384614 134 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 MT-TT-201ENST00000387460 66 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 MIR526A2-201ENST00000390198 65 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 MTCO2P24-201ENST00000515611 426 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 RNA5SP404-201ENST00000517118 132 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 HSPE1P19-201ENST00000603327 295 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 AC027335.2-201ENST00000624030 375 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 AC099654.10-201ENST00000640395 161 ntBASIC0.98□□□□□ -2.25
NKX6-3A6NJ46 MIR335-201ENST00000362173 94 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.416-201ENST00000384014 113 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.477-201ENST00000384352 108 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 Y_RNA.486-201ENST00000384398 107 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 MIR548O-201ENST00000408583 114 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 AC063976.4-201ENST00000421971 163 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 SNORD79.1-201ENST00000516069 84 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 MIR4643-201ENST00000577473 78 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 AC006441.5-201ENST00000612680 209 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 AC008133.2-201ENST00000624540 351 ntBASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
NKX6-3A6NJ46 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
NKX6-3A6NJ46 RNA5SP264-201ENST00000363115 107 ntBASIC0.96□□□□□ -2.26
NKX6-3A6NJ46 SNORD27-201ENST00000363981 72 ntBASIC0.96□□□□□ -2.26
NKX6-3A6NJ46 Y_RNA.288-201ENST00000364854 92 ntBASIC0.96□□□□□ -2.26
NKX6-3A6NJ46 SNORA80D-201ENST00000384488 135 ntBASIC0.96□□□□□ -2.26
NKX6-3A6NJ46 Y_RNA.547-201ENST00000384654 119 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms