Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 AC024067.1-201ENST00000426199 223 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 AL160004.2-201ENST00000432935 350 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 RNU7-115P-201ENST00000516433 55 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 SNORA40.14-201ENST00000516543 86 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 AL138825.1-201ENST00000618587 192 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 7SK.10-201ENST00000621414 298 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 AL606534.2-204ENST00000635008 178 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 AC112487.2-201ENST00000637950 304 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 AC134026.1-201ENST00000623249 2239 ntBASIC0.73□□□□□ -2.29
RPAP3Q9H6T3 RNA5SP347-201ENST00000362445 119 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 Y_RNA.252-201ENST00000364556 101 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 RNU1-115P-201ENST00000365329 160 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 RNA5SP193-201ENST00000410353 107 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 RNU2-14P-201ENST00000411053 191 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 HMGN1P10-201ENST00000474557 553 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 NDUFA4P2-201ENST00000489989 244 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 AC127455.1-201ENST00000565496 145 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 JPX_2.1-201ENST00000614161 69 ntBASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.72□□□□□ -2.29
RPAP3Q9H6T3 RNA5SP499-201ENST00000363982 119 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.286-201ENST00000364813 102 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.551-201ENST00000384661 102 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 MTND5P15-201ENST00000434246 349 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 AC006157.1-201ENST00000611750 366 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 MIR548AY-201ENST00000617669 107 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 AC007742.2-201ENST00000618226 398 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 MIR4251-201ENST00000635819 61 ntBASIC0.71□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.439-201ENST00000384119 94 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 SNORD63-201ENST00000384262 68 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 SNORD38C-201ENST00000384381 69 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 SNORD99-201ENST00000408612 74 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 MIR1302-7-201ENST00000408841 72 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 AC098934.3-201ENST00000430450 190 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 AC236972.2-201ENST00000434979 310 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 AC036111.3-201ENST00000526389 112 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 MIR4711-201ENST00000578274 70 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 AL353765.1-201ENST00000605514 183 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 AC008133.2-201ENST00000624540 351 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 AC068700.1-201ENST00000565862 3754 ntBASIC0.7□□□□□ -2.3
RPAP3Q9H6T3 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.263-201ENST00000364659 114 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.315-201ENST00000365117 102 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.471-201ENST00000384312 102 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 RNU6-21P-201ENST00000384710 107 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 MIR802-201ENST00000390235 94 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 SNORD72-201ENST00000390994 80 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 RNU6-130P-201ENST00000411112 103 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 SNRPGP14-201ENST00000435400 219 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 AL392103.1-201ENST00000447000 198 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 RNU6-976P-201ENST00000516086 111 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 RNU11-2P-201ENST00000516898 142 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 RNU7-181P-201ENST00000517234 74 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 AC087685.1-201ENST00000587507 141 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 PART1_1.1-201ENST00000611761 217 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 MIR6516-201ENST00000630554 81 ntBASIC0.69□□□□□ -2.3
RPAP3Q9H6T3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 RNU4-80P-201ENST00000363200 141 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.383-201ENST00000383855 97 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 RNU6-442P-201ENST00000383968 104 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 RNU6-110P-201ENST00000384508 104 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 SNORA2B-201ENST00000384583 137 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.579-201ENST00000390939 94 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 RNU6-1009P-201ENST00000390996 107 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 U7.7-201ENST00000459276 60 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 RNU7-141P-201ENST00000459304 62 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 U8.20-201ENST00000459445 131 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 RPL23AP91-201ENST00000569211 455 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 AC007485.1-201ENST00000616755 206 ntBASIC0.68□□□□□ -2.3
RPAP3Q9H6T3 SNORD114-23-201ENST00000363536 72 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 RNU6-801P-201ENST00000364087 105 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 SNORA36B-201ENST00000410438 131 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 RNU6-994P-201ENST00000410507 111 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 AC092628.1-201ENST00000436250 252 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 AC113410.1-201ENST00000505029 247 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 RNU6-1046P-201ENST00000516538 107 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.713-201ENST00000517013 96 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 AC104465.1-201ENST00000611365 139 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 AC243829.3-201ENST00000622177 108 ntBASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.67□□□□□ -2.3
RPAP3Q9H6T3 RNU6-268P-201ENST00000364174 107 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 Y_RNA.526-201ENST00000384572 110 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 U8.17-201ENST00000391292 132 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 SNORD111-201ENST00000408139 94 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 RNU6-437P-201ENST00000459408 95 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 RNU6-830P-201ENST00000516353 107 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 AC040926.1-201ENST00000530195 238 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 AC004817.2-201ENST00000561794 651 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 MIR2681-201ENST00000581814 105 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 MIR4795-201ENST00000584182 89 ntBASIC0.66□□□□□ -2.3
RPAP3Q9H6T3 AC008507.4-201ENST00000585464 127 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms