Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MIR3149-201ENST00000584629 83 ntBASIC1.17□□□□□ -2.22
CCDC28BQ9BUN5 AL513534.2-201ENST00000603836 250 ntBASIC1.17□□□□□ -2.22
CCDC28BQ9BUN5 AC103810.9-201ENST00000606688 112 ntBASIC1.17□□□□□ -2.22
CCDC28BQ9BUN5 BX284668.6-201ENST00000606899 438 ntBASIC1.17□□□□□ -2.22
CCDC28BQ9BUN5 Y_RNA.802-201ENST00000614892 130 ntBASIC1.17□□□□□ -2.22
CCDC28BQ9BUN5 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
CCDC28BQ9BUN5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC28BQ9BUN5 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 Y_RNA.117-201ENST00000363294 101 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 Y_RNA.122-201ENST00000363331 96 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 Y_RNA.293-201ENST00000364908 93 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 Y_RNA.416-201ENST00000384014 113 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 MIR452-201ENST00000385020 85 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 MLLT10P1-201ENST00000418346 262 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 AL591704.2-201ENST00000421658 181 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 AC023449.1-201ENST00000454464 154 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 SNORD11-201ENST00000459124 84 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 AC114811.1-201ENST00000507207 168 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 RPL23AP91-201ENST00000569211 455 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 MIR4778-201ENST00000577635 80 ntBASIC1.16□□□□□ -2.22
CCDC28BQ9BUN5 SNORD50B-201ENST00000364995 70 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 SNORA22-201ENST00000383907 134 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 SNORA22C-201ENST00000384614 134 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 SNORA8.3-201ENST00000384679 139 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 SNORD58.1-201ENST00000391313 66 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 NDUFA4P2-201ENST00000489989 244 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-322P-201ENST00000516010 103 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.679-201ENST00000516416 91 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-548P-201ENST00000517083 115 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-1116P-201ENST00000517269 99 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 AC090049.2-201ENST00000550377 109 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 MIR3937-201ENST00000580135 106 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 AL021707.8-201ENST00000609428 183 ntBASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.20-201ENST00000362479 113 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-457P-201ENST00000363999 107 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 SNORD14E-201ENST00000364009 85 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 MIR1289-2-201ENST00000408360 111 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 PIGPP3-201ENST00000425307 415 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AC093850.1-201ENST00000454121 251 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.638-201ENST00000459374 113 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 OR2A41P-201ENST00000473586 105 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 RPL30P7-201ENST00000479312 323 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AC100767.1-201ENST00000528178 123 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AC008507.4-201ENST00000585464 127 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AC006006.1-201ENST00000603082 144 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AL365434.2-201ENST00000607979 234 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AL121890.5-201ENST00000620848 304 ntBASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
CCDC28BQ9BUN5 AC068700.1-201ENST00000565862 3754 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 AL442644.1-201ENST00000454390 3105 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.54-201ENST00000362766 105 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.304-201ENST00000365011 112 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-442P-201ENST00000383968 104 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 MIR626-201ENST00000385032 94 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 MIR15B-201ENST00000385045 98 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 MIR1278-201ENST00000408753 81 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-383P-201ENST00000410864 94 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-651P-201ENST00000411040 105 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 AC092991.1-201ENST00000477176 376 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 AC108210.2-201ENST00000503681 201 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-1023P-201ENST00000516137 106 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 AC019176.1-201ENST00000518519 225 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 AL442067.1-201ENST00000613261 223 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 AC106754.2-201ENST00000623006 233 ntBASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.13□□□□□ -2.23
CCDC28BQ9BUN5 Y_RNA.277-201ENST00000364754 102 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 AL451046.2-201ENST00000403074 277 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 MIR1298-201ENST00000408783 112 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 RPS27P16-201ENST00000425758 201 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-917P-201ENST00000516294 104 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-126P-201ENST00000516685 103 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 RNU1-92P-201ENST00000517017 135 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 AC019288.1-201ENST00000557918 224 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 MIR4643-201ENST00000577473 78 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 AL357312.1-201ENST00000603879 298 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 GHRLOS.1-201ENST00000610995 70 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 uc_338.4-201ENST00000616635 176 ntBASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.12□□□□□ -2.23
CCDC28BQ9BUN5 RNU6-1138P-201ENST00000365359 106 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 MIR526A1-201ENST00000384897 85 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 MIR136-201ENST00000385207 82 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 MIR802-201ENST00000390235 94 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 AL591806.2-201ENST00000433122 173 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 snoU13.23-201ENST00000458863 104 ntBASIC1.11□□□□□ -2.23
CCDC28BQ9BUN5 COX6CP14-201ENST00000469580 174 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 235.3 ms